DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and Zif

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001189188.1 Gene:Zif / 40795 FlyBaseID:FBgn0037446 Length:388 Species:Drosophila melanogaster


Alignment Length:378 Identity:104/378 - (27%)
Similarity:170/378 - (44%) Gaps:55/378 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KVCRTC-GKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCST---LPNRLCASCQTCLQQAIS 64
            :.||.| .:....:|...|.|:..::..|.:..|.|....|.:.   :|:.:|.||:..|..|..
  Fly     8 QTCRVCLAQSERLQRLDEIREEGEESPNEMLIQLLGVSYSNLNDREHIPDGICKSCKVELNMAYQ 72

  Fly    65 FRERCLEVQREL------LHSQDDEDFLRICQESPKS--------VLE---------QEE----- 101
            |||:.|..|.|:      |...|:.|.:.|.:|....        :||         |||     
  Fly    73 FREKALRKQMEIEEYCRELGLLDESDVMMIKEEDGSQQQCDEEMYILEETTTGEEEHQEEKGHEE 137

  Fly   102 -LELDLAE----ISIEVERLDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYLIY 161
             ||:|.::    |...:|.|:|  ...|:.:..:.|.:|...|..|:.|:.:         ..:.
  Fly   138 YLEVDTSDQQECIGDTIEYLED--NYTIEMNSDQTEIVLESEKQYEETPSQQ---------LALQ 191

  Fly   162 ESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRT--FFCEECGNHIKDRISFILHCKRHRGVKEF 224
            |:     ||..||:.....::..|.....|....  :.|:.|||..:.|...:.|.:||.|:.::
  Fly   192 EA-----AKASLKARRGRVRRGLNSLTTSDGTEKGGYICDVCGNFYEKRGRMMEHRRRHDGICQY 251

  Fly   225 GCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAF 289
            .||.|:.:|....:|::|:..|||.||:||..|||.|...|....||..|...:|:|||.|:.||
  Fly   252 ACELCDAKFQVREQLRKHMYSHTGSKPYKCSFCSRQFFYESVLKSHENVHRGIKPYVCKVCDKAF 316

  Fly   290 TTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKADTI 342
            ..::.|..|.|:|:..|.:|||.|:|.|....|:..|..:..|:..:..|:::
  Fly   317 AYAHSLTKHELIHSDIKLYRCDYCNKDFRLLHHMRQHEETKLHQNAVMLAESM 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 22/81 (27%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
ZifNP_001189188.1 zf-AD 9..87 CDD:285071 22/77 (29%)
C2H2 Zn finger 225..245 CDD:275368 6/19 (32%)
COG5048 <250..369 CDD:227381 43/118 (36%)
C2H2 Zn finger 253..273 CDD:275368 6/19 (32%)
zf-H2C2_2 266..288 CDD:290200 12/21 (57%)
C2H2 Zn finger 281..301 CDD:275368 8/19 (42%)
zf-H2C2_2 294..318 CDD:290200 10/23 (43%)
C2H2 Zn finger 309..329 CDD:275368 8/19 (42%)
C2H2 Zn finger 337..353 CDD:275368 6/15 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 60 1.000 Domainoid score I10558
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.960

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