DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and D19B

DIOPT Version :10

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_477297.1 Gene:D19B / 38717 FlyBaseID:FBgn0022699 Length:774 Species:Drosophila melanogaster


Alignment Length:523 Identity:107/523 - (20%)
Similarity:176/523 - (33%) Gaps:205/523 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERC 69
            |||||....:...:.::|  |.....:.:.:.|...::.....|..||..|.:.|.....|:::|
  Fly    12 VCRTCLSTVDDSAAYDLF--RVPGLAKKLCVCTSLSVEQADGFPKNLCNVCFSKLNDLHDFQKQC 74

  Fly    70 LE-VQR--ELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKV 131
            :: ||:  :|:.|.     ...||.:      .:.|:...|...:..|..|:::..|:.:|  |:
  Fly    75 VDSVQKFQDLVASN-----AFACQTN------FDVLDTSAAVADLPGEEEDNVHFDPLLNS--KI 126

  Fly   132 EDILNESKINEDEPNNEDDIDYSEMDYL----------IYES--DTEVDAKQELKSDSENPKKRR 184
            |.|.||..:.:...:.|.:::..||:..          .:||  |.::||..::.||.:.|..:|
  Fly   127 EIIENEEDVFKMLESVEKEVEEVEMEMEQPFGRVSQDDSFESGNDNDLDADFQISSDDDIPLAQR 191

  Fly   185 NRR-------------------------------------NP-------------RDSNRTFFCE 199
            :||                                     ||             ||.:|...|.
  Fly   192 SRRGATRGSKAKGKPKSAAKRQEEESEESEETSSSDDSDGNPKDKPKRKRIPATERDRHRLIDCH 256

  Fly   200 ECGNHIKDRISFILHCKRHRGV------------------------------------------- 221
            .|....|..|.:..|.|.|..:                                           
  Fly   257 ICHQKFKKAIRYEEHMKHHNDLLPFQCTVESCRKGFTTANGLRVHVEHAHTETSAMHPCTYEGCN 321

  Fly   222 -----------------------KEFGCEFCEDRFCTPAELKRHIRKHTGEK-PFKCRHCSRSF- 261
                                   ::|.|..||..|..|..||:|:.|||||: ||.|..|.:.| 
  Fly   322 KSFARPVLLSFHMKRVHKVDTPQRDFPCTECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFP 386

  Fly   262 -----SDY-------------------STRL---KHERTHTNERPFVCKECNNAFTTSYILKNHM 299
                 .|:                   :||.   ||..|||.|:.:.|::|::|......|.||:
  Fly   387 INSVLRDHLLRHAGIKNHVCPYCGVGKTTRQEWNKHILTHTKEKKYECRQCDHASHNKQALANHV 451

  Fly   300 LV-----------------------------HTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRN 335
            .|                             |||||...|.:|.|:|.....||.|.::: .:|:
  Fly   452 KVVHEKRKDFACQYCGKTFGKSHACKIHERSHTGEKCCECKICGKVFLFEKGLTKHLKTH-EKRD 515

  Fly   336 MQK 338
            :.|
  Fly   516 LPK 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..76 CDD:462262 17/73 (23%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 26/82 (32%)
C2H2 Zn finger 226..246 CDD:275368 8/19 (42%)
zf-H2C2_2 238..262 CDD:463886 13/30 (43%)
C2H2 Zn finger 254..274 CDD:275368 8/47 (17%)
C2H2 Zn finger 282..302 CDD:275368 7/48 (15%)
zf-H2C2_2 295..319 CDD:463886 13/52 (25%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
D19BNP_477297.1 zf-AD 12..83 CDD:214871 17/72 (24%)
C2H2 Zn finger 255..275 CDD:275368 6/19 (32%)
SFP1 <266..365 CDD:227516 12/98 (12%)
C2H2 Zn finger 283..335 CDD:275368 0/51 (0%)
C2H2 Zn finger 318..338 CDD:275368 0/19 (0%)
COG5048 <347..512 CDD:227381 47/165 (28%)
C2H2 Zn finger 349..369 CDD:275368 8/19 (42%)
C2H2 Zn finger 378..398 CDD:275368 4/19 (21%)
C2H2 Zn finger 406..426 CDD:275368 4/19 (21%)
C2H2 Zn finger 434..455 CDD:275368 7/20 (35%)
C2H2 Zn finger 463..483 CDD:275368 0/19 (0%)
C2H2 Zn finger 491..511 CDD:275368 7/19 (37%)
C2H2 Zn finger 586..607 CDD:275368
C2H2 Zn finger 615..635 CDD:275368
zf-H2C2_2 627..652 CDD:463886
C2H2 Zn finger 643..663 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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