DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ZNF233

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_024307256.1 Gene:ZNF233 / 353355 HGNCID:30946 Length:727 Species:Homo sapiens


Alignment Length:342 Identity:92/342 - (26%)
Similarity:142/342 - (41%) Gaps:78/342 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 HIKLLTGAVLKNC----------STLPN--------RLCASCQTC---LQQAISFRERCLEVQRE 75
            |.::.||..|..|          |.||:        :|| :|..|   ...::.|...|::...|
Human   389 HQRVSTGENLYRCQVYARSSNQNSCLPSHELTHPGEKLC-TCGRCGKGFHHSLDFDIHCVDSAGE 452

  Fly    76 LLHSQD--DEDFLRICQESPKSVLE--QEELELDLA---EISIEVERLDDLNEG----------- 122
            .....|  |:.|      |..|.|:  |.....|..   |:|   :|:.:.|.|           
Human   453 RACKCDVYDKGF------SQTSQLQAHQRGHSRDKTYKWEVS---DRIFNRNSGLHQRVHTGEKP 508

  Fly   123 ---PIQSSGF-KVEDILNESKINEDE-PNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKK 182
               .:...|| |..::....:|:..| |...|..|.:      :..::.:.|.|.:.: .|.|.|
Human   509 YKCEVCDKGFSKASNLQAHQRIHTGEKPYKCDVCDKN------FSRNSHLQAHQRVHT-GEKPYK 566

  Fly   183 RRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHT 247
                           |:.||...........|.:.|:|.|.:.||.|...|...:.|:.|.:.||
Human   567 ---------------CDTCGKDFSQISHLQAHQRVHKGEKPYKCETCGKGFSQSSHLQDHQQVHT 616

  Fly   248 GEKPFKCRHCSRSFSDYSTRLK-HERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCD 311
            ||.|:||..|.:.|| :|:.|: |:|.||.|:|:.|:||...|..:..|..|..:|||||.::|.
Human   617 GENPYKCDVCGKGFS-WSSHLQAHQRVHTGEKPYKCEECRKGFIWNSYLHVHQRIHTGEKPYKCG 680

  Fly   312 LCDKLFSRYTHLTTHYR 328
            :|.|.||:.:||..|.|
Human   681 MCGKSFSQTSHLQAHQR 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 15/65 (23%)
C2H2 Zn finger 198..218 CDD:275368 4/19 (21%)
COG5048 222..>276 CDD:227381 22/54 (41%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 10/23 (43%)
C2H2 Zn finger 254..274 CDD:275368 8/20 (40%)
zf-H2C2_2 269..291 CDD:290200 10/22 (45%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
ZNF233XP_024307256.1 KRAB 65..123 CDD:214630
C2H2 Zn finger 321..337 CDD:275368
C2H2 Zn finger 345..365 CDD:275368
C2H2 Zn finger 377..393 CDD:275368 1/3 (33%)
C2H2 Zn finger 401..421 CDD:275368 4/19 (21%)
C2H2 Zn finger 429..449 CDD:275368 4/19 (21%)
COG5048 <507..656 CDD:227381 47/171 (27%)
C2H2 Zn finger 511..531 CDD:275368 3/19 (16%)
C2H2 Zn finger 539..559 CDD:275368 4/25 (16%)
C2H2 Zn finger 567..587 CDD:275368 4/19 (21%)
C2H2 Zn finger 595..615 CDD:275368 6/19 (32%)
C2H2 Zn finger 623..643 CDD:275368 8/20 (40%)
C2H2 Zn finger 651..671 CDD:275368 6/19 (32%)
zf-C2H2 677..699 CDD:306579 9/21 (43%)
C2H2 Zn finger 679..699 CDD:275368 9/19 (47%)
zf-H2C2_2 691..714 CDD:316026 4/7 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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