DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and CG17568

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_609951.2 Gene:CG17568 / 35198 FlyBaseID:FBgn0032763 Length:513 Species:Drosophila melanogaster


Alignment Length:456 Identity:98/456 - (21%)
Similarity:161/456 - (35%) Gaps:143/456 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGK---RTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCST-------LPNRLCASCQTCLQ 60
            ||.|.|   ..|.:..:|   :.:|...:::.::  |:.|....       |.:.||..|.|.:.
  Fly    11 CRLCAKDDAHGNVKVQMN---ENSQGNWDNVLIM--AIRKYFEVQMQLEDELSSVLCTECYTLIS 70

  Fly    61 QAISFRERCLEVQR--ELLHSQD-------------------DEDFLRICQESPKSVLEQEEL-- 102
            :.|.|.|...:||.  |:|...:                   |:|:..|.:..|...:|.:.:  
  Fly    71 ELIDFAEHVTKVQDIFEVLRRTETDGDQEMDVAALRQQFGLCDDDWTHIIKPIPALEMESDNVYQ 135

  Fly   103 -------ELDLAE-----------------------ISIEVERLDDLNEGPI----QSSGFKVED 133
                   :..|||                       :.:|:.:.:.::.|||    .:|...:||
  Fly   136 KPAELLKDFPLAETSSQEMEISKRTTTTHLIQTKKNVEMEIPKQEFIDLGPILLEKNTSQLDMED 200

  Fly   134 ILNESKINE-DEP---------------------NNEDDIDYSEMDYLIYESDTEVDAKQELKSD 176
            :|:|....| .:|                     :.|.|.|:..:|..:.:..........|:|.
  Fly   201 VLDELPQEELSQPRLDSTTSPASMENDVKSEMLDSCEGDDDFLPVDGQLMDLVAVATTPNTLEST 265

  Fly   177 SENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILH----CKR-------------------- 217
            :|. |.:|.|.:         ||:||...::|.|:..|    |:|                    
  Fly   266 AEE-KAKRGRMD---------CEKCGKVYRNRASYEKHLERECRRIERRVKVDKTTTTCDICNKT 320

  Fly   218 --------------HRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRL 268
                          |:.||.:.|:.|..:..|...|..|...||..:||:|..|...|.:.:...
  Fly   321 LSSATALKLHKEGIHQNVKPYICDSCGKQLKTITALNEHKLVHTESRPFECTVCKAGFKNRARLK 385

  Fly   269 KHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHR 333
            .|.:.|. |..|||..|.....|......|.:|||.|:..:||:|..||.|...|.||..|:...
  Fly   386 AHYQIHA-EPSFVCNICGKKLQTRRTWNMHKVVHTEERRLKCDVCGALFKRSKTLKTHLLSHTGL 449

  Fly   334 R 334
            |
  Fly   450 R 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 20/82 (24%)
C2H2 Zn finger 198..218 CDD:275368 9/57 (16%)
COG5048 222..>276 CDD:227381 15/53 (28%)
C2H2 Zn finger 226..246 CDD:275368 5/19 (26%)
zf-H2C2_2 238..262 CDD:290200 8/23 (35%)
C2H2 Zn finger 254..274 CDD:275368 4/19 (21%)
zf-H2C2_2 269..291 CDD:290200 7/21 (33%)
C2H2 Zn finger 282..302 CDD:275368 4/19 (21%)
zf-H2C2_2 295..319 CDD:290200 10/23 (43%)
C2H2 Zn finger 310..328 CDD:275368 9/17 (53%)
CG17568NP_609951.2 zf-AD 10..87 CDD:214871 19/80 (24%)
COG5048 <313..471 CDD:227381 39/139 (28%)
C2H2 Zn finger 314..335 CDD:275368 0/20 (0%)
C2H2 Zn finger 343..363 CDD:275368 5/19 (26%)
C2H2 Zn finger 371..391 CDD:275368 4/19 (21%)
C2H2 Zn finger 398..418 CDD:275368 4/19 (21%)
C2H2 Zn finger 426..446 CDD:275368 9/19 (47%)
zf-H2C2_2 439..463 CDD:290200 5/12 (42%)
C2H2 Zn finger 454..475 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 84 1.000 Inparanoid score I1804
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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