DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and CG3847

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_572317.2 Gene:CG3847 / 31577 FlyBaseID:FBgn0029867 Length:380 Species:Drosophila melanogaster


Alignment Length:278 Identity:66/278 - (23%)
Similarity:110/278 - (39%) Gaps:70/278 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 SVLEQEELELDLAEISI----------EVERLDDLNEGPIQSSGFKVEDILNESK-INEDEPNNE 148
            |.:|:|.:|......:|          |||..::|.:|         |::.::.: :..|....|
  Fly   100 STVEEETIEQGDGTHTILHIVPNIHGEEVEEDEELEDG---------EEVEHDDEFVTVDHEGGE 155

  Fly   149 DDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFIL 213
            .:::..|:..:::||..: .|:|:                |...|:||:|..|||......|..|
  Fly   156 LEVEDDEVGSIVFESTID-HAEQD----------------PYGRNKTFYCPNCGNCYSAAGSLKL 203

  Fly   214 H---CKRHR---GVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHER 272
            |   |.|.|   ...|..|:.|...|.:.|.||.|:.:||||:||:|..|.|.|.:.|....|..
  Fly   204 HMRACLRQRNEISTDERKCKVCSKVFNSVAYLKEHMMRHTGEQPFRCTRCYRKFVEESKFTAHME 268

  Fly   273 THTNE---------------------RPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKL 316
            :|.::                     :.|.|..|:..||..:.      |...::.:.||.|...
  Fly   269 SHKHQDKLEAEAVALAAQHGGKKVVVKEFQCAFCSQNFTVVFD------VGQVKRRYACDACRDK 327

  Fly   317 FSRYTHLTTHYRSNAHRR 334
            :|....|..|.:....:|
  Fly   328 YSNAEALRQHKQQVEEKR 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 8/22 (36%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 6/19 (32%)
zf-H2C2_2 269..291 CDD:290200 6/42 (14%)
C2H2 Zn finger 282..302 CDD:275368 4/19 (21%)
zf-H2C2_2 295..319 CDD:290200 4/23 (17%)
C2H2 Zn finger 310..328 CDD:275368 6/17 (35%)
CG3847NP_572317.2 C2H2 Zn finger 188..216 CDD:275368 10/27 (37%)
C2H2 Zn finger 222..242 CDD:275368 7/19 (37%)
C2H2 Zn finger 250..270 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000724
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.000

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