DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and Zfp280d

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_666336.3 Gene:Zfp280d / 235469 MGIID:2384583 Length:974 Species:Mus musculus


Alignment Length:385 Identity:86/385 - (22%)
Similarity:134/385 - (34%) Gaps:123/385 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GKRTNAERSLN------IFEKRNQTTLEHIK---LLTGAVLKNCSTLPNRLCAS----------- 54
            |..||:.|.|:      :|:....|.|.|.:   .|:.|.|...|.|..|...|           
Mouse   140 GYVTNSPRVLSNNSSELLFDLTQDTGLSHYQGGPTLSIAGLNETSFLSKRPSGSDISSVNPKKPK 204

  Fly    55 --------------------CQTCLQQAISFRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQ 99
                                ....||...|....|...|     |::...|.|.|   ||..:..
Mouse   205 PSENTSGIDASSVISSEKSPSVISLQVVPSQGANCSSSQ-----SKNGTTFPRAC---PKCDIHF 261

  Fly   100 EELE----------LDLAEISIEVERLDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDDIDYS 154
            ..|:          .|:....:.:.:.|:||..             ||:|..|.|.        .
Mouse   262 NLLDPLKNHMTYCCPDMINNFLGLTKADNLNSA-------------NEAKTLESEK--------G 305

  Fly   155 EMDYLI---YESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCK 216
            ::..|:   |....|.|..:|.|                 ::.||.|..|...:|:.|.|:.|.|
Mouse   306 KLIMLVNDFYYGKHEGDVLEEQK-----------------THTTFKCFSCLKVLKNNIRFMNHMK 353

  Fly   217 RHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSF-SDYSTRLKHERTHT-NERP 279
            .|..:::...|..|              |||     .|:||.|.| :.:..:...|.||| :|..
Mouse   354 HHLELEKQSSESWE--------------KHT-----TCQHCYRQFPTPFQLQCHIESTHTPHEFS 399

  Fly   280 FVCKECNNAFTTSYILKNHMLVH--TGEKAFRCDLCDKLFSRYTHLTTHYR-SNAHRRNM 336
            .:||.|..:|.|..||..||..:  .||..:.|.:|:...|.::.:.:|:| |:.:.:|:
Mouse   400 TICKICELSFETEQILLQHMKDNHKPGEMPYICQVCNYRSSLFSEVESHFRTSHENTKNL 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 21/106 (20%)
C2H2 Zn finger 198..218 CDD:275368 7/19 (37%)
COG5048 222..>276 CDD:227381 14/55 (25%)
C2H2 Zn finger 226..246 CDD:275368 2/19 (11%)
zf-H2C2_2 238..262 CDD:290200 8/24 (33%)
C2H2 Zn finger 254..274 CDD:275368 6/20 (30%)
zf-H2C2_2 269..291 CDD:290200 9/22 (41%)
C2H2 Zn finger 282..302 CDD:275368 9/19 (47%)
zf-H2C2_2 295..319 CDD:290200 7/25 (28%)
C2H2 Zn finger 310..328 CDD:275368 4/17 (24%)
Zfp280dNP_666336.3 DUF4195 57..241 CDD:290548 20/100 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 188..216 2/27 (7%)
C2H2 Zn finger 335..369 CDD:275371 10/47 (21%)
C2H2 Zn finger 372..393 CDD:275368 6/20 (30%)
C2H2 Zn finger 402..423 CDD:275368 9/20 (45%)
C2H2 Zn finger 432..451 CDD:275368 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 507..624
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 751..797
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 815..974
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.