DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and Zfp612

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_006530970.1 Gene:Zfp612 / 234725 MGIID:2443465 Length:735 Species:Mus musculus


Alignment Length:348 Identity:97/348 - (27%)
Similarity:138/348 - (39%) Gaps:74/348 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCAS---CQTCLQQAISFR- 66
            |..|||..|.          |...::|.::.||.....|.     :|..   |.|.|:|..|.. 
Mouse   402 CSDCGKAFNV----------NAKLIQHQRIHTGEKPYECD-----VCGKGFRCSTQLRQHQSIHT 451

  Fly    67 ----ERCLE-----------VQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERL 116
                .||.|           :|.:.:|:.:..   ..|.:..|:...:.:|        |:.:|:
Mouse   452 GEKPHRCSECGKGFTKNAKLIQHQRVHTGEKP---YACSDCGKTFSAKGKL--------IQHQRI 505

  Fly   117 DDLNEGPIQSS----GFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDS 177
             ...|.|.:.|    .|:....|.:..          .|...|..|...|..         |:.:
Mouse   506 -HTGERPYECSECGKSFRCNSQLRQHL----------RIHTGEKPYKCSECG---------KAFN 550

  Fly   178 ENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRH 242
            .|.|..::||. ....:.|.|:|||.....:.:.:.|.:.|.|.|.:.|..|...|...|:|.||
Mouse   551 VNAKLMQHRRT-HTGEKPFECKECGKCFTSKRNLLDHQRAHTGEKPYQCSECGKAFSINAKLTRH 614

  Fly   243 IRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKA 307
            .:.||.||||||..|.::||..|..:.|:|.||.|:||.|.||..||..:..|..|...|||||.
Mouse   615 QQIHTREKPFKCMECEKAFSCSSDYIVHQRIHTGEKPFQCGECGKAFHVNAHLIRHQRSHTGEKP 679

  Fly   308 FRCDLCDKLFSRYT----HLTTH 326
            |||..|.|.||..:    |.|.|
Mouse   680 FRCTECGKGFSLSSDCIIHQTVH 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 20/89 (22%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 23/53 (43%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 12/21 (57%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 13/23 (57%)
C2H2 Zn finger 310..328 CDD:275368 8/21 (38%)
Zfp612XP_006530970.1 KRAB 74..134 CDD:214630
C2H2 Zn finger 290..310 CDD:275368
COG5048 314..720 CDD:227381 97/348 (28%)
C2H2 Zn finger 318..338 CDD:275368
C2H2 Zn finger 346..366 CDD:275368
C2H2 Zn finger 374..394 CDD:275368
C2H2 Zn finger 402..422 CDD:275368 7/29 (24%)
C2H2 Zn finger 430..450 CDD:275368 7/24 (29%)
C2H2 Zn finger 458..478 CDD:275368 3/19 (16%)
C2H2 Zn finger 486..506 CDD:275368 5/28 (18%)
C2H2 Zn finger 514..534 CDD:275368 3/29 (10%)
C2H2 Zn finger 542..562 CDD:275368 6/29 (21%)
C2H2 Zn finger 570..590 CDD:275368 5/19 (26%)
C2H2 Zn finger 598..618 CDD:275368 7/19 (37%)
C2H2 Zn finger 626..646 CDD:275368 7/19 (37%)
C2H2 Zn finger 654..674 CDD:275368 7/19 (37%)
C2H2 Zn finger 682..702 CDD:275368 7/19 (37%)
C2H2 Zn finger 710..730 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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