DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and Zfp12

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001276518.1 Gene:Zfp12 / 231866 MGIID:99157 Length:686 Species:Mus musculus


Alignment Length:330 Identity:85/330 - (25%)
Similarity:133/330 - (40%) Gaps:58/330 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERC 69
            ||..|||..:.:.:||          :|.|:.||..|..||.     |..| .|.:..::...|.
Mouse   376 VCHDCGKTFSQKSALN----------DHQKIHTGVKLYKCSE-----CGKC-FCRKSTLTTHMRT 424

  Fly    70 LEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKVEDI 134
            ...::....::..:.|.|:...:........|...:.||..               .|.:....:
Mouse   425 HTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECAECG---------------KSFYLNSAL 474

  Fly   135 LNESKINEDEPN---NEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTF 196
            :...:::..|..   ||....:|::.||.....|....|                        .:
Mouse   475 MRHQRVHTGEKPYECNECGKLFSQLSYLTVHHRTHSGVK------------------------PY 515

  Fly   197 FCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSF 261
            .|.|||.......:...|.:.|||.|.:.|..|...|...:.|..|.|.|:||||::||.|.:||
Mouse   516 ECSECGKTFYQNSALCRHRRIHRGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECRECGKSF 580

  Fly   262 SDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTH 326
            ...|...:|:||||.|:.:.|.||...|:....|..|..:|:|||.|.|:.|.|.|||.::||.|
Mouse   581 CQNSALNRHQRTHTGEKAYECYECGKCFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVH 645

  Fly   327 YRSNA 331
            :|:::
Mouse   646 HRTHS 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 18/71 (25%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 22/53 (42%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 9/17 (53%)
Zfp12NP_001276518.1 C2H2 Zn finger 489..509 CDD:275368 5/19 (26%)
C2H2 Zn finger 517..537 CDD:275368 5/19 (26%)
C2H2 Zn finger 545..565 CDD:275368 6/19 (32%)
C2H2 Zn finger 573..593 CDD:275368 8/19 (42%)
C2H2 Zn finger 601..621 CDD:275368 6/19 (32%)
C2H2 Zn finger 629..649 CDD:275368 10/19 (53%)
C2H2 Zn finger 657..677 CDD:275368
KRAB 8..68 CDD:214630
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..129
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..198
COG5048 251..677 CDD:227381 85/330 (26%)
C2H2 Zn finger 265..285 CDD:275368
C2H2 Zn finger 293..313 CDD:275368
C2H2 Zn finger 321..341 CDD:275368
C2H2 Zn finger 349..369 CDD:275368
C2H2 Zn finger 377..397 CDD:275368 8/29 (28%)
C2H2 Zn finger 405..425 CDD:275368 6/25 (24%)
C2H2 Zn finger 433..453 CDD:275368 2/19 (11%)
C2H2 Zn finger 461..481 CDD:275368 3/34 (9%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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