DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and Zfp281

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001153723.1 Gene:Zfp281 / 226442 MGIID:3029290 Length:893 Species:Mus musculus


Alignment Length:217 Identity:60/217 - (27%)
Similarity:94/217 - (43%) Gaps:26/217 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 VERLDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDS 177
            ::.|..|::...|.......|:|..|....||..|::.           :.|..|...:..|.:|
Mouse   173 IQDLSLLHQHAQQQPAQHHRDVLLSSGSRTDEHGNQEP-----------KQDANVKKAKRPKPES 226

  Fly   178 ENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRH 242
            :..|.   :|.|..|::....|..|..:..            ..|...|:.|...|.:...|:||
Mouse   227 QGIKA---KRKPSASSKPLVGEGEGAVLSP------------SQKPHICDHCSAAFRSSYHLRRH 276

  Fly   243 IRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKA 307
            :..||||:||:|..||..|.......:||:.|:.|:||.|.:|:..|...|.::.|...|:|||.
Mouse   277 VLIHTGERPFQCSQCSMGFIQKYLLQRHEKIHSREKPFGCDQCSMKFIQKYHMERHKRTHSGEKP 341

  Fly   308 FRCDLCDKLFSRYTHLTTHYRS 329
            ::||.|.:.|||...|..|.|:
Mouse   342 YKCDTCQQYFSRTDRLLKHRRT 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 2/19 (11%)
COG5048 222..>276 CDD:227381 20/53 (38%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 6/19 (32%)
zf-H2C2_2 269..291 CDD:290200 9/21 (43%)
C2H2 Zn finger 282..302 CDD:275368 5/19 (26%)
zf-H2C2_2 295..319 CDD:290200 9/23 (39%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
Zfp281NP_001153723.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..113
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 126..148
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 153..172
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..251 14/66 (21%)
zf-C2H2 258..280 CDD:278523 6/21 (29%)
C2H2 Zn finger 260..280 CDD:275368 6/19 (32%)
zf-H2C2_2 272..297 CDD:290200 13/24 (54%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
zf-H2C2_2 301..325 CDD:290200 9/23 (39%)
C2H2 Zn finger 316..336 CDD:275368 5/19 (26%)
zf-H2C2_2 328..353 CDD:290200 9/24 (38%)
C2H2 Zn finger 344..363 CDD:275368 8/18 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 371..425
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 613..658
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 775..815
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.