DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ZNF583

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_005258615.1 Gene:ZNF583 / 147949 HGNCID:26427 Length:570 Species:Homo sapiens


Alignment Length:303 Identity:79/303 - (26%)
Similarity:118/303 - (38%) Gaps:73/303 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 RELLHSQDDEDFLRICQESP--KSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKVEDILN 136
            |.|.:|.|.......||...  |:.|..:|:.|.                          :.|:.
Human   108 RHLSYSLDYPSLREDCQSEDWYKNQLGSQEVHLS--------------------------QLIIT 146

  Fly   137 ESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQEL----KSDSENPKKRRNRR---------- 187
            ..:|..:..|.|    |:: .:..:..||..|.:|..    |:....|:|:..|:          
Human   147 HKEILPEVQNKE----YNK-SWQTFHQDTIFDIQQSFPTKEKAHKHEPQKKSYRKKSVEMKHRKV 206

  Fly   188 ----------------NPRDS----------NRTFFCEECGNHIKDRISFILHCKRHRGVKEFGC 226
                            |...|          .:.:.|.|||.......:...|.:.|.|.|.:.|
Human   207 YVEKKLLKCNDCEKVFNQSSSLTLHQRIHTGEKPYACVECGKTFSQSANLAQHKRIHTGEKPYEC 271

  Fly   227 EFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTT 291
            :.|...|...|.|.:|.|.||||||::|:.|.::||..:...:|:|.||.||||.|.||..||:.
Human   272 KECRKAFSQNAHLAQHQRVHTGEKPYQCKECKKAFSQIAHLTQHQRVHTGERPFECIECGKAFSN 336

  Fly   292 SYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRR 334
            ...|..|..:|||||.:.|::|.|.||...:|..|.|.:...|
Human   337 GSFLAQHQRIHTGEKPYVCNVCGKAFSHRGYLIVHQRIHTGER 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 1/2 (50%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 11/23 (48%)
C2H2 Zn finger 254..274 CDD:275368 6/19 (32%)
zf-H2C2_2 269..291 CDD:290200 13/21 (62%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
ZNF583XP_005258615.1 C2H2 Zn finger 355..375 CDD:275368 8/19 (42%)
zf-H2C2_2 367..392 CDD:290200 4/13 (31%)
C2H2 Zn finger 383..403 CDD:275368
zf-H2C2_2 395..420 CDD:290200
C2H2 Zn finger 411..431 CDD:275368
zf-H2C2_2 423..448 CDD:290200
C2H2 Zn finger 439..459 CDD:275368
zf-H2C2_2 451..476 CDD:290200
C2H2 Zn finger 467..487 CDD:275368
zf-H2C2_2 480..504 CDD:290200
C2H2 Zn finger 495..515 CDD:275368
zf-H2C2_2 507..532 CDD:290200
C2H2 Zn finger 523..543 CDD:275368
KRAB 7..67 CDD:214630
KRAB 7..46 CDD:279668
COG5048 210..543 CDD:227381 56/170 (33%)
C2H2 Zn finger 215..235 CDD:275368 2/19 (11%)
zf-H2C2_2 227..252 CDD:290200 5/24 (21%)
C2H2 Zn finger 243..263 CDD:275368 5/19 (26%)
zf-H2C2_2 255..280 CDD:290200 7/24 (29%)
C2H2 Zn finger 271..291 CDD:275368 7/19 (37%)
zf-H2C2_2 283..308 CDD:290200 12/24 (50%)
C2H2 Zn finger 299..319 CDD:275368 6/19 (32%)
zf-H2C2_2 311..336 CDD:290200 13/24 (54%)
C2H2 Zn finger 327..347 CDD:275368 7/19 (37%)
zf-H2C2_2 340..364 CDD:290200 11/23 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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