DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and LOC110439308

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_021330454.1 Gene:LOC110439308 / 110439308 -ID:- Length:556 Species:Danio rerio


Alignment Length:381 Identity:108/381 - (28%)
Similarity:148/381 - (38%) Gaps:89/381 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSLNIF--EKRNQTTLEHIK------LLTGAVLKNCSTLPNRLCASCQTCLQQA 62
            |:|..:.|  |:..:.|  .|.::....|::      |.|..|||...  .|||     ||.|..
Zfish    30 CKTTHEDT--EQQTDPFGENKESEEEERHVEAEKNPNLQTSGVLKRRD--KNRL-----TCTQCG 85

  Fly    63 ISFRERCLEVQREL-LHSQDDEDFLRI--------CQESPKSVLEQEELELDLAEISIEVERLDD 118
            .|||     .::.| ||       :||        |.:..||......|.|.:        |: .
Zfish    86 KSFR-----TKKSLKLH-------MRIHTRKKPFKCTQCGKSFQYSSSLNLHM--------RI-H 129

  Fly   119 LNEGPIQ----SSGFKVEDILNE-SKINEDE-----PNNEDDIDYS---EMDYLIYESDTEVDAK 170
            ..|.|..    ...||....||: .:|:..|     ...|....|:   ....:|:..:......
Zfish   130 TGERPFTCTQCGKSFKHSSHLNQHMRIHTGERPFTCTQCEKSFQYTSNLNKHMMIHTGERPFTCT 194

  Fly   171 QELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCT 235
            |..||..|..:..::.....| .:.|.|.:||...|..:|.|.|...|.|.|.|.|..|...|..
Zfish   195 QCGKSFRETSQLNKHMMIHTD-EKPFTCTKCGKSFKHELSVIKHMMIHTGAKPFICSQCGKSFRL 258

  Fly   236 PAELKRHIRKHTGEKPFKC--------------RH--------------CSRSFSDYSTRLKHER 272
            .:.|.:|:|.|||||||.|              :|              |.:|||..|.|.:|.|
Zfish   259 SSSLNQHMRVHTGEKPFTCPQCGKSFRYVSNFTKHKMIHTGEKPYACSQCGKSFSHSSHRNRHMR 323

  Fly   273 THTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYR 328
            |||.|:|..|.:|..:|:....|..||.:|||||.|.|..|.|.||..:.||.|.:
Zfish   324 THTGEKPHTCTQCGTSFSEPSSLNQHMRIHTGEKPFTCSQCGKSFSLSSRLTQHMK 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 22/79 (28%)
C2H2 Zn finger 198..218 CDD:275368 7/19 (37%)
COG5048 222..>276 CDD:227381 27/81 (33%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 14/51 (27%)
C2H2 Zn finger 254..274 CDD:275368 10/47 (21%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 13/23 (57%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
LOC110439308XP_021330454.1 COG5048 81..450 CDD:227381 92/321 (29%)
C2H2 Zn finger 81..101 CDD:275368 9/31 (29%)
C2H2 Zn finger 109..129 CDD:275368 6/28 (21%)
C2H2 Zn finger 137..157 CDD:275368 4/19 (21%)
C2H2 Zn finger 165..185 CDD:275368 2/19 (11%)
C2H2 Zn finger 193..213 CDD:275368 4/19 (21%)
C2H2 Zn finger 221..241 CDD:275368 7/19 (37%)
C2H2 Zn finger 249..269 CDD:275368 6/19 (32%)
C2H2 Zn finger 277..297 CDD:275368 2/19 (11%)
C2H2 Zn finger 305..325 CDD:275368 8/19 (42%)
C2H2 Zn finger 333..353 CDD:275368 6/19 (32%)
C2H2 Zn finger 361..381 CDD:275368 8/19 (42%)
C2H2 Zn finger 389..409 CDD:275368
SFP1 <412..491 CDD:227516
C2H2 Zn finger 417..437 CDD:275368
C2H2 Zn finger 445..465 CDD:275368
C2H2 Zn finger 473..493 CDD:275368
C2H2 Zn finger 501..521 CDD:275368
zf-H2C2_2 514..538 CDD:316026
C2H2 Zn finger 529..549 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.