DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ERV3-1-ZNF117

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001334979.1 Gene:ERV3-1-ZNF117 / 109504726 -ID:- Length:483 Species:Homo sapiens


Alignment Length:357 Identity:88/357 - (24%)
Similarity:129/357 - (36%) Gaps:96/357 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSLNIFEKRNQTTLEHIKL-LTGAVLKNCSTL-------PNRLCASCQTCLQQA 62
            |:.|||..|....| |..||..|..:..|. ..|......|||       ...:...|:.|::  
Human   167 CKECGKAFNQTSHL-IRHKRIHTEEKPYKCEECGKAFNQSSTLTTHNIIHTGEIPYKCEKCVR-- 228

  Fly    63 ISFRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSS 127
             :|.:.....:.:|:|:.:..   ..|:|..|:                                
Human   229 -AFNQASKLTEHKLIHTGEKR---YECEECGKA-------------------------------- 257

  Fly   128 GFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDS 192
                  ....||:.|.:        |......:|:  .|...|...:|.:....||.:     ..
Human   258 ------FNRSSKLTEHK--------YIHTGEKLYK--CEECGKAFNQSSTLTTHKRIH-----SG 301

  Fly   193 NRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHC 257
            .:.:.|||||...|...:...|.|.|.|.|.:.||.|...|...:.|.||...||||||:||..|
Human   302 EKPYKCEECGKAFKQFSNLTDHKKIHTGEKPYKCEECGKAFNQLSNLTRHKVIHTGEKPYKCGEC 366

  Fly   258 SRSFSDYSTRLKHERTHTNERP----------------------------FVCKECNNAFTTSYI 294
            .::|:..|....|:..||.|.|                            :.|:||..||..|..
Human   367 GKAFNQSSALNTHKIIHTGENPHKCRESGKVFHLSSKLSTCKKIHTGEKLYKCEECGKAFNRSST 431

  Fly   295 LKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTH 326
            |..|..:|||||.::|:.|.|.|::.:.||||
Human   432 LIGHKRIHTGEKPYKCEECGKAFNQSSTLTTH 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 18/78 (23%)
C2H2 Zn finger 198..218 CDD:275368 8/19 (42%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 5/19 (26%)
zf-H2C2_2 269..291 CDD:290200 10/49 (20%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
ERV3-1-ZNF117NP_001334979.1 C2H2 Zn finger 111..131 CDD:275368
C2H2 Zn finger 139..159 CDD:275368
COG5048 163..>475 CDD:227381 88/357 (25%)
C2H2 Zn finger 167..187 CDD:275368 9/20 (45%)
C2H2 Zn finger 195..215 CDD:275368 4/19 (21%)
C2H2 Zn finger 223..243 CDD:275368 4/22 (18%)
C2H2 Zn finger 251..271 CDD:275368 7/65 (11%)
C2H2 Zn finger 279..299 CDD:275368 5/19 (26%)
C2H2 Zn finger 307..327 CDD:275368 8/19 (42%)
C2H2 Zn finger 335..355 CDD:275368 7/19 (37%)
C2H2 Zn finger 363..383 CDD:275368 5/19 (26%)
C2H2 Zn finger 391..407 CDD:275368 0/15 (0%)
C2H2 Zn finger 419..439 CDD:275368 8/19 (42%)
C2H2 Zn finger 447..467 CDD:275368 8/17 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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