DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and LOC105947126

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_012817464.2 Gene:LOC105947126 / 105947126 -ID:- Length:694 Species:Xenopus tropicalis


Alignment Length:283 Identity:87/283 - (30%)
Similarity:119/283 - (42%) Gaps:31/283 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAE----------------ISIEVERLDDLN 120
            |:.|...|::|.:|....|.:.||.:.:..|:....|                |.....:.|:..
 Frog    97 VKEEPASSEEDNNFADQIQITDKSTVIRWSLDSSTTEHIQGTDTPTPIMGFSLIKTNSNKYDENA 161

  Fly   121 EGPIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRN 185
            :.....||.....:.|:...||...:..|...        ::....|..:::..|.||..|....
 Frog   162 DTSPDKSGIATNTLCNKYSCNECHKHFTDKRK--------FDKHQRVHKREKPFSCSECGKSFPC 218

  Fly   186 RRNPRDSNRT------FFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIR 244
            |.|....:||      |||.|||.....|.....||:.|.|.|.:.|..|...|...:.||.|.|
 Frog   219 RSNLDRHHRTHTGEKPFFCSECGKCFSCRSDLKKHCRTHTGEKPYSCSECGKCFSYRSHLKEHYR 283

  Fly   245 KHTGEKPFKCRHCSRSFSD-YSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAF 308
            .|||||||.|..|.:|||. |...:...||||.|:|:.|.||...|..|..|..|...||||:.|
 Frog   284 THTGEKPFSCSECGKSFSSLYMCNVHQRRTHTGEKPYSCSECGKCFAASSDLTVHHRTHTGERPF 348

  Fly   309 RCDLCDKLFSRYTHLTTHYRSNA 331
            .|..|.|.||..:||..|||:::
 Frog   349 PCPDCGKCFSYRSHLKEHYRTHS 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 2/4 (50%)
C2H2 Zn finger 198..218 CDD:275368 7/19 (37%)
COG5048 222..>276 CDD:227381 24/54 (44%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 14/23 (61%)
C2H2 Zn finger 254..274 CDD:275368 7/20 (35%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
LOC105947126XP_012817464.2 C2H2 Zn finger 181..201 CDD:275368 3/27 (11%)
COG5048 205..609 CDD:227381 68/167 (41%)
C2H2 Zn finger 209..229 CDD:275368 6/19 (32%)
C2H2 Zn finger 237..257 CDD:275368 7/19 (37%)
C2H2 Zn finger 265..285 CDD:275368 7/19 (37%)
C2H2 Zn finger 293..314 CDD:275368 7/20 (35%)
C2H2 Zn finger 322..342 CDD:275368 7/19 (37%)
C2H2 Zn finger 350..370 CDD:275368 10/19 (53%)
C2H2 Zn finger 378..398 CDD:275368
C2H2 Zn finger 406..426 CDD:275368
C2H2 Zn finger 434..452 CDD:275368
C2H2 Zn finger 463..484 CDD:275368
C2H2 Zn finger 492..512 CDD:275368
C2H2 Zn finger 520..540 CDD:275368
C2H2 Zn finger 548..568 CDD:275368
C2H2 Zn finger 576..594 CDD:275368
C2H2 Zn finger 604..624 CDD:275368
C2H2 Zn finger 641..661 CDD:275368
C2H2 Zn finger 669..689 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 80 1.000 Domainoid score I8468
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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