DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ranshi and LOC105945437

DIOPT Version :9

Sequence 1:	NP_649824.1	Gene:	ranshi / 41041	FlyBaseID:	FBgn0037620	Length:	346	Species:	Drosophila melanogaster
Sequence 2:	XP_031748906.1	Gene:	LOC105945437 / 105945437	-ID:	-	Length:	511	Species:	Xenopus tropicalis

Alignment Length:	148	Identity:	62/148 - (41%)
Similarity:	77/148 - (52%)	Gaps:	2/148 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly   185 NRRNPRDSNRTFFCEECGNHIKDRISFILHCKR-HRGVKEFGCEFCEDRFCTPAELKRHIRKHTG 248
            :||......:.|.|.|||..........:|.:| |.|.|.|.|..||..|.:.:||..|.|.|||
Frog   328 HRRRNHTGEKPFSCSECGKRFASSSDLTVHQRRNHTGEKPFSCSECEKCFASSSELTIHRRTHTG 392

  Fly   249 EKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNH-MLVHTGEKAFRCDL 312
            |||:.|..|.:.|...|....|.||||.|:||.|.||...||||..|.:| ..:|||||.|.|..
Frog   393 EKPYSCSECQKCFVSSSDFTVHRRTHTGEKPFSCSECGKCFTTSSELTSHRRRIHTGEKPFYCSE 457

  Fly   313 CDKLFSRYTHLTTHYRSN 330
            |.|.|:..:.||.|.|::
Frog   458 CGKSFASSSELTVHQRTH 475

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ranshi	NP_649824.1	zf-AD	5..77	CDD:214871
		C2H2 Zn finger	198..218	CDD:275368	6/20 (30%)
		COG5048	222..>276	CDD:227381	24/53 (45%)
		C2H2 Zn finger	226..246	CDD:275368	8/19 (42%)
		zf-H2C2_2	238..262	CDD:290200	12/23 (52%)
		C2H2 Zn finger	254..274	CDD:275368	6/19 (32%)
		zf-H2C2_2	269..291	CDD:290200	12/21 (57%)
		C2H2 Zn finger	282..302	CDD:275368	9/20 (45%)
		zf-H2C2_2	295..319	CDD:290200	12/24 (50%)
		C2H2 Zn finger	310..328	CDD:275368	7/17 (41%)
LOC105945437	XP_031748906.1	KRAB_A-box	88..>118	CDD:143639
		zf-C2H2	282..304	CDD:395048
		C2H2 Zn finger	284..304	CDD:275368
		SUF4-like	308..>362	CDD:411020	9/33 (27%)
		C2H2 Zn finger	312..333	CDD:411020	2/4 (50%)
		C2H2 Zn finger	312..333	CDD:275368	2/4 (50%)
		COG5048	<337..502	CDD:227381	60/139 (43%)
		C2H2 Zn finger	341..362	CDD:411020	6/20 (30%)
		C2H2 Zn finger	341..362	CDD:275368	6/20 (30%)
		C2H2 Zn finger	370..390	CDD:275368	8/19 (42%)
		C2H2 Zn finger	398..418	CDD:275368	6/19 (32%)
		C2H2 Zn finger	426..447	CDD:275368	9/20 (45%)
		C2H2 Zn finger	455..475	CDD:275368	8/19 (42%)
		C2H2 Zn finger	483..500	CDD:275368
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	80	1.000	Domainoid score	I8468
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.000