DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and LOC105945437

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_031748906.1 Gene:LOC105945437 / 105945437 -ID:- Length:511 Species:Xenopus tropicalis


Alignment Length:148 Identity:62/148 - (41%)
Similarity:77/148 - (52%) Gaps:2/148 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 NRRNPRDSNRTFFCEECGNHIKDRISFILHCKR-HRGVKEFGCEFCEDRFCTPAELKRHIRKHTG 248
            :||......:.|.|.|||..........:|.:| |.|.|.|.|..||..|.:.:||..|.|.|||
 Frog   328 HRRRNHTGEKPFSCSECGKRFASSSDLTVHQRRNHTGEKPFSCSECEKCFASSSELTIHRRTHTG 392

  Fly   249 EKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNH-MLVHTGEKAFRCDL 312
            |||:.|..|.:.|...|....|.||||.|:||.|.||...||||..|.:| ..:|||||.|.|..
 Frog   393 EKPYSCSECQKCFVSSSDFTVHRRTHTGEKPFSCSECGKCFTTSSELTSHRRRIHTGEKPFYCSE 457

  Fly   313 CDKLFSRYTHLTTHYRSN 330
            |.|.|:..:.||.|.|::
 Frog   458 CGKSFASSSELTVHQRTH 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 6/20 (30%)
COG5048 222..>276 CDD:227381 24/53 (45%)
C2H2 Zn finger 226..246 CDD:275368 8/19 (42%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 6/19 (32%)
zf-H2C2_2 269..291 CDD:290200 12/21 (57%)
C2H2 Zn finger 282..302 CDD:275368 9/20 (45%)
zf-H2C2_2 295..319 CDD:290200 12/24 (50%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
LOC105945437XP_031748906.1 KRAB_A-box 88..>118 CDD:143639
zf-C2H2 282..304 CDD:395048
C2H2 Zn finger 284..304 CDD:275368
SUF4-like 308..>362 CDD:411020 9/33 (27%)
C2H2 Zn finger 312..333 CDD:411020 2/4 (50%)
C2H2 Zn finger 312..333 CDD:275368 2/4 (50%)
COG5048 <337..502 CDD:227381 60/139 (43%)
C2H2 Zn finger 341..362 CDD:411020 6/20 (30%)
C2H2 Zn finger 341..362 CDD:275368 6/20 (30%)
C2H2 Zn finger 370..390 CDD:275368 8/19 (42%)
C2H2 Zn finger 398..418 CDD:275368 6/19 (32%)
C2H2 Zn finger 426..447 CDD:275368 9/20 (45%)
C2H2 Zn finger 455..475 CDD:275368 8/19 (42%)
C2H2 Zn finger 483..500 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 80 1.000 Domainoid score I8468
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.