DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and LOC101732212

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_012808890.2 Gene:LOC101732212 / 101732212 -ID:- Length:773 Species:Xenopus tropicalis


Alignment Length:436 Identity:106/436 - (24%)
Similarity:158/436 - (36%) Gaps:123/436 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NIFEKRNQTTL-----EHIKLLTGAVLKNCSTLPNRLCASCQTCLQQ-------AISFRERCLEV 72
            ::.:|.|...:     ..|:||||.|...|..:      |....|::       ...:||...|.
 Frog    61 SVIQKENDKKILELISNIIQLLTGEVAIRCEDV------SIYFSLEEWEYIKGNKALYREGIKEE 119

  Fly    73 QRE-------LLHSQDDEDF-----LRIC----------------QESPKSVLEQE--------E 101
            :.|       ....:|..|.     ..:|                |..|.:|:::|        :
 Frog   120 EEEPQQLRPLACEYKDGSDVTAHTEATLCCNNDGNLTNPDVSPAEQPPPANVIKEEPASWEGGNQ 184

  Fly   102 LELDLAEISIEVERLDDLNEGPIQS---SGFKVEDILNESKINEDEPN----NEDDIDYSEMDYL 159
            .:..:..::.:::..|  ...||..   :....||.::.. |.|:|.:    |:.|...:.:...
 Frog   185 SDCSINPLTEQIQGTD--TPTPIMGCSLNNSSAEDYISVG-IKEEESSWDGGNQSDCSINPLTEQ 246

  Fly   160 IYESDTEV--------DAKQELKSDSEN----PKKR---------------------RN------ 185
            |..:||..        ..|.|.|...||    |.|.                     ||      
 Frog   247 IQGTDTPTPIMGCSRNSIKMEGKKYDENSLQSPHKSHITKNTLCRKYSCNENQKLFFRNSIQSKF 311

  Fly   186 RRNP--RDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTG 248
            :|:|  ....:.|.|.|||....::.....|...|||.|.|.|..|:..|...:.|..|.|.|||
 Frog   312 KRHPVTHTGEKPFSCSECGKCFTNKSDLKRHQITHRGEKPFSCSECKKCFSRQSNLACHQRTHTG 376

  Fly   249 EKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLC 313
            ||||.|..|.:.|..:|..::||||||.|:||.|.:|...|.....|..|...|||||.|.|..|
 Frog   377 EKPFSCSECGKRFLTHSHLVRHERTHTGEKPFSCSQCGKCFANQSDLDRHQRTHTGEKTFSCSEC 441

  Fly   314 DKLFSRYTHLTTHYRSNA------------------HRRNMQKADT 341
            .|.||:.::|..|.|::.                  ||...|:..|
 Frog   442 GKCFSQRSNLDRHQRTHTGEKPFSCSECGKCFSNEYHRDRHQRIHT 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 15/75 (20%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 24/53 (45%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 12/21 (57%)
C2H2 Zn finger 282..302 CDD:275368 5/19 (26%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
LOC101732212XP_012808890.2 KRAB_A-box 88..>117 CDD:413388 5/34 (15%)
C2H2 Zn finger 295..318 CDD:275368 4/22 (18%)
zf-C2H2 324..346 CDD:395048 6/21 (29%)
C2H2 Zn finger 326..346 CDD:275368 5/19 (26%)
COG5048 350..753 CDD:227381 51/138 (37%)
C2H2 Zn finger 354..374 CDD:275368 6/19 (32%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
C2H2 Zn finger 410..430 CDD:275368 5/19 (26%)
C2H2 Zn finger 438..458 CDD:275368 8/19 (42%)
C2H2 Zn finger 466..486 CDD:275368 3/19 (16%)
C2H2 Zn finger 494..514 CDD:275368
C2H2 Zn finger 522..542 CDD:275368
C2H2 Zn finger 550..570 CDD:275368
C2H2 Zn finger 578..598 CDD:275368
C2H2 Zn finger 606..626 CDD:275368
C2H2 Zn finger 634..654 CDD:275368
C2H2 Zn finger 662..682 CDD:275368
C2H2 Zn finger 690..710 CDD:275368
C2H2 Zn finger 718..737 CDD:275368
C2H2 Zn finger 745..765 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 80 1.000 Domainoid score I8468
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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