DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and znf341

DIOPT Version :10

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_004918579.2 Gene:znf341 / 100497785 XenbaseID:XB-GENE-960338 Length:849 Species:Xenopus tropicalis


Alignment Length:372 Identity:79/372 - (21%)
Similarity:143/372 - (38%) Gaps:63/372 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGK----RTNAERSLNIFE--KRNQTTLEHIKLLTGAVLK-NCSTLPNRLC---ASCQTCLQ 60
            |..||:    ::|.::.:...:  .|.|.|.:.:..::..||. |.|....::.   |:.|...:
 Frog   354 CIVCGRAFAQKSNVKKHMQTHKVWPREQNTTKSLAPVSVQVLPLNPSQAQEKVAENGANSQPPTE 418

  Fly    61 QAISFRERCLEVQRELLHSQDDEDFLRI------CQESPKSVLEQEELELDLAEISIEVERLDDL 119
            :|.:   ..:||....:....|...:.:      ||..|.......:|:..:.:     .:.:.:
 Frog   419 EAPA---EGMEVAPGSMGEGPDAKHVVLVDSSYHCQFCPSKFDSYFQLKSHMTQ-----HKQEQV 475

  Fly   120 NEGPIQSSGF---KVEDILNESKINEDEPN------NEDDIDYSEMDYLIYESD--TEVDAKQE- 172
            .:..::..|.   |::..|...|.:::|..      |:|.....||....|...  .::..|:: 
 Frog   476 YKCVVKGCGHTSQKLDHFLEHIKTHQEELTYRCHLCNKDCASLYEMGVHQYSHCMLPQITPKKDQ 540

  Fly   173 -----LKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKR--------HRGVKEF 224
                 ||..::........::.:.:..::.|..|..        :..|:|        |.|...:
 Frog   541 AVYKCLKCMNKYSTPEALEQHLQTATHSYPCPHCPK--------VFPCERYLRRHLPTHGGGGRY 597

  Fly   225 GCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVC------K 283
            .|..|:..|.....||.|...|:|||||:|..|..:|:......:|...|...:.:.|      .
 Frog   598 KCPICKKLFRREHYLKLHSHIHSGEKPFRCALCDSAFNRKDKLKRHMLIHVPYKKYKCPFSRSHT 662

  Fly   284 ECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSN 330
            .||..|.....||.|||.|:|.|..:|..|.|.|||..|:..|.||:
 Frog   663 GCNKEFNRPDKLKAHMLSHSGIKTHKCQYCSKSFSRRAHMVEHQRSH 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..76 CDD:462262 16/79 (20%)
C2H2 Zn finger 198..218 CDD:275368 4/27 (15%)
COG5048 222..>276 CDD:227381 17/53 (32%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:463886 11/23 (48%)
C2H2 Zn finger 254..274 CDD:275368 4/19 (21%)
C2H2 Zn finger 282..302 CDD:275368 9/25 (36%)
zf-H2C2_2 295..319 CDD:463886 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
znf341XP_004918579.2 C2H2 Zn finger 326..346 CDD:275368
zf-H2C2_2 338..363 CDD:463886 3/8 (38%)
COG5048 342..705 CDD:227381 76/366 (21%)
C2H2 Zn finger 354..374 CDD:275368 4/19 (21%)
C2H2 Zn finger 450..470 CDD:275368 4/24 (17%)
C2H2 Zn finger 478..500 CDD:275368 4/21 (19%)
C2H2 Zn finger 508..528 CDD:275368 5/19 (26%)
C2H2 Zn finger 545..567 CDD:275370 2/21 (10%)
C2H2 Zn finger 571..591 CDD:275368 4/27 (15%)
C2H2 Zn finger 599..619 CDD:275368 6/19 (32%)
C2H2 Zn finger 627..647 CDD:275368 4/19 (21%)
C2H2 Zn finger 655..681 CDD:275368 9/25 (36%)
C2H2 Zn finger 689..709 CDD:275368 9/19 (47%)
C2H2 Zn finger 717..738 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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