DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and LOC100487628

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_031748854.1 Gene:LOC100487628 / 100487628 -ID:- Length:814 Species:Xenopus tropicalis


Alignment Length:200 Identity:63/200 - (31%)
Similarity:75/200 - (37%) Gaps:53/200 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 RTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCS 258
            :.|.|.:||.....|.....|.|.|.|.|.|.|..|..||...::||||.|.|.|||||.|..|.
 Frog   545 KPFSCSDCGKCFTHRSDLNRHRKTHNGDKPFPCPDCGKRFAQRSDLKRHYRTHNGEKPFSCPECG 609

  Fly   259 RSFSD-----------------------------------------------------YSTRLKH 270
            :.||.                                                     ||...||
 Frog   610 KCFSQRSLLNKHLTTHGEDAFPLEFGKCFNHLSDFGQQKTDAAEKQFSCSECDKCFKHYSDLKKH 674

  Fly   271 ERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRN 335
            :|.||.|:||.|.||..:||....|..|..:|||||.|.|..|.|.|.:...|..|.||:...|.
 Frog   675 QRVHTGEKPFSCAECGRSFTQRANLNKHNRIHTGEKPFSCSECGKSFIQRAQLIQHQRSHNGARP 739

  Fly   336 MQKAD 340
            ...:|
 Frog   740 FSCSD 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 27/106 (25%)
C2H2 Zn finger 226..246 CDD:275368 9/19 (47%)
zf-H2C2_2 238..262 CDD:290200 13/23 (57%)
C2H2 Zn finger 254..274 CDD:275368 9/72 (13%)
zf-H2C2_2 269..291 CDD:290200 12/21 (57%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 6/17 (35%)
LOC100487628XP_031748854.1 SUF4-like 492..>537 CDD:411020
C2H2 Zn finger 492..513 CDD:411020
C2H2 Zn finger 492..513 CDD:275368
C2H2 Zn finger 521..541 CDD:275368
zf-H2C2_2 534..558 CDD:404364 4/12 (33%)
zf-C2H2 547..569 CDD:395048 7/21 (33%)
C2H2 Zn finger 549..569 CDD:275368 6/19 (32%)
zf-H2C2_2 561..586 CDD:404364 10/24 (42%)
C2H2 Zn finger 577..597 CDD:275368 9/19 (47%)
zf-H2C2_2 589..614 CDD:404364 14/24 (58%)
C2H2 Zn finger 605..625 CDD:275368 4/19 (21%)
zf-C2H2 656..678 CDD:395048 5/21 (24%)
C2H2 Zn finger 658..678 CDD:275368 5/19 (26%)
COG5048 682..>798 CDD:227381 24/62 (39%)
C2H2 Zn finger 686..706 CDD:275368 7/19 (37%)
C2H2 Zn finger 714..734 CDD:275368 7/19 (37%)
C2H2 Zn finger 742..762 CDD:275368 0/2 (0%)
C2H2 Zn finger 770..790 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 80 1.000 Domainoid score I8468
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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