DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and znf982

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_017207343.2 Gene:znf982 / 100331424 ZFINID:ZDB-GENE-131120-1 Length:600 Species:Danio rerio


Alignment Length:353 Identity:95/353 - (26%)
Similarity:135/353 - (38%) Gaps:101/353 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 EKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERCLEVQRELLH--------- 78
            |..:.|..||..||....:|            ..||.:.|.||..:|     :|.|         
Zfish   157 EIESHTKTEHSLLLKRPAIK------------AFTCTRCAKSFSYKC-----DLNHHIRIHNGEK 204

  Fly    79 ----SQDDEDFLR-----------------ICQESPKSVLEQEELELDLAEISIEVERLDDLNEG 122
                |..|:.|.|                 .|.:..||.::                 :..||:.
Zfish   205 PYKCSHCDKRFNRSGHLKTHERIHTGEKPYTCDQCGKSFVQ-----------------ISHLNQH 252

  Fly   123 PIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRR 187
            .|..:|.|..                 ..|.....:|:|         .|||   ::.|..:|  
Zfish   253 MIIHNGEKTY-----------------TCDQCSKTFLVY---------SELK---DHLKVHKN-- 286

  Fly   188 NPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPF 252
                ..::..|.|||.:.....|...|.|.|.||:|:.|..||..|.|..:||:|.:.||||||:
Zfish   287 ----ETKSHTCPECGKNFIWHSSLKKHQKIHTGVREYMCSECEKTFITSGDLKQHQKIHTGEKPY 347

  Fly   253 KCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLF 317
            .|.||::.||.......|||.||.|:|:.|.:|..:|..|..|..|||:|.|||..:||.|.|.|
Zfish   348 MCSHCNKRFSHVKPLKVHERIHTGEKPYTCTQCGKSFRQSAHLNEHMLIHNGEKTHKCDHCGKTF 412

  Fly   318 SRYTHLTTHYRSNAHRRNMQKADTIFDK 345
            .|.:.|..|.|  .|.:....:.::.:|
Zfish   413 LRPSELKKHLR--VHTKEKPYSCSVCEK 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 13/53 (25%)
C2H2 Zn finger 198..218 CDD:275368 7/19 (37%)
COG5048 222..>276 CDD:227381 24/53 (45%)
C2H2 Zn finger 226..246 CDD:275368 8/19 (42%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-H2C2_2 295..319 CDD:290200 13/23 (57%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
znf982XP_017207343.2 C2H2 Zn finger 180..200 CDD:275368 7/24 (29%)
COG5048 204..537 CDD:227381 80/289 (28%)
C2H2 Zn finger 208..228 CDD:275368 4/19 (21%)
C2H2 Zn finger 236..256 CDD:275368 6/36 (17%)
C2H2 Zn finger 264..284 CDD:275368 7/31 (23%)
C2H2 Zn finger 293..313 CDD:275368 7/19 (37%)
C2H2 Zn finger 321..341 CDD:275368 8/19 (42%)
C2H2 Zn finger 349..369 CDD:275368 8/19 (42%)
C2H2 Zn finger 377..397 CDD:275368 8/19 (42%)
C2H2 Zn finger 405..425 CDD:275368 9/21 (43%)
C2H2 Zn finger 433..453 CDD:275368 1/6 (17%)
C2H2 Zn finger 461..481 CDD:275368
C2H2 Zn finger 489..509 CDD:275368
C2H2 Zn finger 517..537 CDD:275368
zf-H2C2_2 529..554 CDD:316026
C2H2 Zn finger 545..565 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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