DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and si:dkey-253d23.2

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_003201060.1 Gene:si:dkey-253d23.2 / 100034432 ZFINID:ZDB-GENE-050208-410 Length:629 Species:Danio rerio


Alignment Length:385 Identity:105/385 - (27%)
Similarity:145/385 - (37%) Gaps:114/385 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASC--------------- 55
            |..|||         .|:.::... :|:.:.||....:|.     ||..|               
Zfish   183 CDQCGK---------CFKDKSYLQ-KHMIIHTGEKPYSCD-----LCGMCFSMKSKLRIHMRVHT 232

  Fly    56 ----QTCLQQAISFRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERL 116
                .:|.|...||:.:....:...:||.:..   ..|.:..|:.|.:..|:|.|...|      
Zfish   233 EEKPFSCDQCGKSFKAKSYLQKHVKIHSTEKP---HSCDQCGKTFLLKANLQLHLKLHS------ 288

  Fly   117 DDLNEGPIQ----SSGFKVEDILNE-----------------------SKIN-------EDEPNN 147
               .|.|..    ...||:...|.|                       ||:|       |.:|.:
Zfish   289 ---EEKPFSCKQCGKSFKLGMYLQEHMKVHSEVRPYVCDQCEKSYKTKSKLNIHLRMHAEKKPFS 350

  Fly   148 EDDI--DYSEMDYLIYESDTEVDAKQELKSDSE-NPKKRRNRRNPRDSNRTFFCEECGNHIKDRI 209
            .|..  ::..::||          ||.:...|: .|.|               |..||...:...
Zfish   351 CDQCGKEFLLIEYL----------KQHMTVHSKVTPHK---------------CPTCGKCFRLLD 390

  Fly   210 SFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTH 274
            :|..|.:||.|||...|..|...|...:||.:|.|.|||||||||.||.:.||.......|||.|
Zfish   391 NFKRHQERHTGVKNHMCFDCGKTFYKSSELIKHQRVHTGEKPFKCSHCDKRFSHTGNLRNHERVH 455

  Fly   275 TNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRR 334
            |.|||..|.:|..:|....||.:||.:|||...:.||.|||.||   |||..|   :||:
Zfish   456 TGERPHTCDQCGKSFQQKRILNDHMNIHTGATPYSCDQCDKSFS---HLTALY---SHRQ 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 16/89 (18%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 25/53 (47%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 15/23 (65%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 11/21 (52%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 10/17 (59%)
si:dkey-253d23.2XP_003201060.1 COG5048 6..475 CDD:227381 85/343 (25%)
C2H2 Zn finger 43..63 CDD:275368
C2H2 Zn finger 71..91 CDD:275368
C2H2 Zn finger 99..119 CDD:275368
C2H2 Zn finger 127..147 CDD:275368
C2H2 Zn finger 155..175 CDD:275368
C2H2 Zn finger 183..203 CDD:275368 6/29 (21%)
C2H2 Zn finger 211..231 CDD:275368 4/24 (17%)
C2H2 Zn finger 239..259 CDD:275368 4/19 (21%)
C2H2 Zn finger 267..287 CDD:275368 6/19 (32%)
C2H2 Zn finger 295..315 CDD:275368 4/19 (21%)
C2H2 Zn finger 323..343 CDD:275368 3/19 (16%)
C2H2 Zn finger 351..371 CDD:275368 5/29 (17%)
C2H2 Zn finger 379..399 CDD:275368 5/19 (26%)
C2H2 Zn finger 407..427 CDD:275368 7/19 (37%)
C2H2 Zn finger 435..455 CDD:275368 8/19 (42%)
C2H2 Zn finger 463..483 CDD:275368 7/19 (37%)
SFP1 <485..564 CDD:227516 14/31 (45%)
C2H2 Zn finger 491..511 CDD:275368 13/25 (52%)
C2H2 Zn finger 518..538 CDD:275368
SFP1 <535..620 CDD:227516
C2H2 Zn finger 546..594 CDD:275368
C2H2 Zn finger 602..621 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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