DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and zgc:162936

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001353568.1 Gene:zgc:162936 / 100005727 ZFINID:ZDB-GENE-030131-5253 Length:602 Species:Danio rerio


Alignment Length:254 Identity:81/254 - (31%)
Similarity:115/254 - (45%) Gaps:24/254 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 HSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKVEDILNESKINE 142
            |.:.:|.| |:..|.|       |.:.||..:..|.|.|:|: ||..|.  .|.:|.:|..:..:
Zfish    21 HEETEEAF-RVKHEDP-------EEQTDLVGLKEEEEELNDM-EGKEQC--VKHQDFVNVEQFIK 74

  Fly   143 DEPNNEDDIDYSEMD---YLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNH 204
            .||.:....|.....   ::..:.......|.:||          |........:.|.||:||..
Zfish    75 IEPTSSGKTDQKNKPNQLFICQQCGRAFSRKYKLK----------NHMTIHTGEKPFTCEQCGKS 129

  Fly   205 IKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLK 269
            ...:.:...|.:.|.|.:.|.|:.|...|...|.||.|.|.|||||||.|..|.:|:........
Zfish   130 FNYKENLNYHMRVHTGERPFSCKECGKSFVHKAALKYHTRVHTGEKPFTCELCGKSYVHKGNLNY 194

  Fly   270 HERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYR 328
            |:|.||.||||.|::|..:|...:.|.||:|.|||||.|:|..|...||...:|.||.:
Zfish   195 HKRGHTGERPFTCEQCGKSFVQKHKLNNHILSHTGEKPFKCLQCGTGFSCKANLHTHMK 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 22/53 (42%)
C2H2 Zn finger 226..246 CDD:275368 8/19 (42%)
zf-H2C2_2 238..262 CDD:290200 14/23 (61%)
C2H2 Zn finger 254..274 CDD:275368 5/19 (26%)
zf-H2C2_2 269..291 CDD:290200 11/21 (52%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 13/23 (57%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
zgc:162936NP_001353568.1 C2H2 Zn finger 95..115 CDD:275368 4/29 (14%)
SFP1 <117..200 CDD:227516 29/82 (35%)
C2H2 Zn finger 123..143 CDD:275368 5/19 (26%)
C2H2 Zn finger 151..171 CDD:275368 8/19 (42%)
C2H2 Zn finger 179..199 CDD:275368 5/19 (26%)
zf-H2C2_2 191..216 CDD:316026 11/24 (46%)
C2H2 Zn finger 207..227 CDD:275368 7/19 (37%)
COG5048 231..597 CDD:227381 9/23 (39%)
C2H2 Zn finger 235..255 CDD:275368 7/19 (37%)
C2H2 Zn finger 263..283 CDD:275368
C2H2 Zn finger 291..308 CDD:275368
C2H2 Zn finger 330..350 CDD:275368
C2H2 Zn finger 358..378 CDD:275368
C2H2 Zn finger 435..455 CDD:275368
C2H2 Zn finger 463..483 CDD:275368
C2H2 Zn finger 491..511 CDD:275368
C2H2 Zn finger 519..539 CDD:275368
C2H2 Zn finger 547..567 CDD:275368
C2H2 Zn finger 575..595 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.