DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8159 and sna

DIOPT Version :9

Sequence 1:NP_649823.2 Gene:CG8159 / 41040 FlyBaseID:FBgn0037619 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster


Alignment Length:245 Identity:65/245 - (26%)
Similarity:95/245 - (38%) Gaps:23/245 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 SSVRRSARSQRQRHEDTAPKTPASPLEVMIKLESLS-NGDEEDDGIDHLDSCNEADMELAIKAMS 153
            :|...|.:|.....:.|.|.:|.|.||...:.|.|| ..|.....:.||  .:||         .
  Fly   155 ASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHL--FDEA---------K 208

  Fly   154 SSTEDDGTTSPVRLKRTRRRGLKKGGKGENRTKVTLPVFFCDQCGNNITGKSSFDRHLRKHSGI- 217
            ||:.....:|......|............|..|...  |.||:|....:......:|.:.|... 
  Fly   209 SSSSGASVSSSSGYSYTPAMSASSASVAANHAKNYR--FKCDECQKMYSTSMGLSKHRQFHCPAA 271

  Fly   218 ------RPFQCELCPARFLSSGELKGHQVMHTGDRKFQCRYCDRTYVNYSGRLRHERTHTNDRPF 276
                  :...||.|...:.:.|.||.|...||...|  |..|.:.:........|.||||.::||
  Fly   272 ECNQEKKTHSCEECGKLYTTIGALKMHIRTHTLPCK--CPICGKAFSRPWLLQGHIRTHTGEKPF 334

  Fly   277 ICAQCGKSFTNSYILKNHMLIHTGERLFRCELCHRSFARPTHLKTHFRSN 326
            .|..|.:||.:...|:.|...|...:.:.|::||:||:|.:.|..|..||
  Fly   335 QCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSN 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8159NP_649823.2 zf-AD 5..78 CDD:214871
C2H2 Zn finger 194..214 CDD:275368 4/19 (21%)
COG5048 <197..322 CDD:227381 36/131 (27%)
zf-H2C2_2 206..231 CDD:290200 5/31 (16%)
C2H2 Zn finger 222..242 CDD:275368 7/19 (37%)
C2H2 Zn finger 250..270 CDD:275368 4/19 (21%)
zf-H2C2_2 265..287 CDD:290200 11/21 (52%)
C2H2 Zn finger 278..298 CDD:275368 6/19 (32%)
zf-H2C2_2 291..315 CDD:290200 8/23 (35%)
C2H2 Zn finger 306..328 CDD:275368 10/21 (48%)
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 4/19 (21%)
zf-H2C2_2 321..344 CDD:290200 10/22 (45%)
zf-C2H2 334..356 CDD:278523 7/21 (33%)
C2H2 Zn finger 336..356 CDD:275368 6/19 (32%)
zf-H2C2_2 348..373 CDD:290200 8/24 (33%)
C2H2 Zn finger 364..380 CDD:275368 7/15 (47%)
C2H2 Zn finger 247..267 CDD:275368 4/19 (21%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-C2H2 306..328 CDD:278523 5/23 (22%)
COG5048 307..>356 CDD:227381 16/50 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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