DRSC/TRiP Functional Genomics Resources

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Protein Alignment nom and gfi1ab

DIOPT Version :10

Sequence 1:NP_649821.2 Gene:nom / 41038 FlyBaseID:FBgn0037617 Length:370 Species:Drosophila melanogaster
Sequence 2:XP_073809527.1 Gene:gfi1ab / 798697 ZFINID:ZDB-GENE-040116-8 Length:398 Species:Danio rerio


Alignment Length:130 Identity:47/130 - (36%)
Similarity:67/130 - (51%) Gaps:1/130 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 CDTCGIIKNNKSSLVRHQFEHNGIRPYPCKECPKTFLVASELKAHNLTHHTLEPPFACRYCDRRY 248
            ||.||....:..||.:|:..|:..|.:.||.|.|:|..:|.|..|.|.|.... |:.|:||.:|:
Zfish   262 CDICGKTFGHAVSLEQHRAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTR-PYPCQYCGKRF 325

  Fly   249 FSVVGRKKHERVHTNERPFVCDQCGKAFTRTCILKAHMAVHQVVRKYSCDVCDRSFSLKKHLATH 313
            ......|||..:||.|:|..|..|||||:::..|..|...|...:.:.||:|.:.|..|..|..|
Zfish   326 HQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 390

  Fly   314  313
            Zfish   391  390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nomNP_649821.2 zf-AD 5..76 CDD:214871
C2H2 Zn finger 184..204 CDD:275368 7/19 (37%)
C2H2 Zn finger 212..261 CDD:275368 18/48 (38%)
C2H2 Zn finger 269..289 CDD:275368 8/19 (42%)
C2H2 Zn finger 297..313 CDD:275368 6/15 (40%)
gfi1abXP_073809527.1 None
Blue background indicates that the domain is not in the aligned region.

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