DRSC/TRiP Functional Genomics Resources

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Protein Alignment nom and lsy-27

DIOPT Version :10

Sequence 1:NP_649821.2 Gene:nom / 41038 FlyBaseID:FBgn0037617 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_001256739.1 Gene:lsy-27 / 180149 WormBaseID:WBGene00009834 Length:250 Species:Caenorhabditis elegans


Alignment Length:100 Identity:25/100 - (25%)
Similarity:45/100 - (45%) Gaps:9/100 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 PKTFLVASELKAHNLTHHTLEPPFACRYCDRRYFSVVGRKKHER-VHTNERPFVCDQCGKAFTRT 279
            |.|....:|||..:     |...|.|..|.:.:.......:|.: :|:||.  .|..|.:|..:.
 Worm     7 PVTRKEDTELKRPD-----LRGKFVCSSCSQNFQHSASLNRHRQLMHSNEH--TCMMCERALNQK 64

  Fly   280 CILKAHMA-VHQVVRKYSCDVCDRSFSLKKHLATH 313
            ..::.||. .|.:.:.::|..|:.:|:.|:.|..|
 Worm    65 ETIREHMRNEHNLAQVFTCGCCNWTFASKRQLTEH 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nomNP_649821.2 zf-AD 5..76 CDD:214871
C2H2 Zn finger 184..204 CDD:275368
C2H2 Zn finger 212..261 CDD:275368 10/45 (22%)
C2H2 Zn finger 269..289 CDD:275368 5/20 (25%)
C2H2 Zn finger 297..313 CDD:275368 5/15 (33%)
lsy-27NP_001256739.1 COG5236 <22..>122 CDD:227561 18/79 (23%)
C2H2 Zn finger 27..48 CDD:275368 3/20 (15%)
C2H2 Zn finger 54..75 CDD:275368 5/20 (25%)
C2H2 Zn finger 83..102 CDD:275368 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.

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