DRSC/TRiP Functional Genomics Resources

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Protein Alignment nom and ZNF560

DIOPT Version :9

Sequence 1:NP_001262384.1 Gene:nom / 41038 FlyBaseID:FBgn0037617 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_689689.2 Gene:ZNF560 / 147741 HGNCID:26484 Length:790 Species:Homo sapiens


Alignment Length:334 Identity:87/334 - (26%)
Similarity:129/334 - (38%) Gaps:72/334 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 IQLITGILLQQIPNAPDMV----C---FCCQTDLQSAMIFRR-----QCILQQKKWVPLLQSDKV 85
            ::.:.||.|.:..|..::.    |   ||....|::.|..:.     :||...|..:.|.     
Human   196 LKTLNGIQLARNQNGEELYDCKQCEDVFCKHPCLKTNMSTQNRGNTSECIQYAKDLLSLY----- 255

  Fly    86 GASEEKKVEPNDPSTKKKTTKRRRGRPRMPLEIVDIVVTNESKASAGESVGGDEFDQPVEISNEP 150
                      |..||.:|.:...:......| |:::.|  :.|.:..:|..|.::.:.....:..
Human   256 ----------NKTSTIRKVSVFSKHGKSFRL-ILNVQV--QRKCTQDKSFEGTDYGKAFIYQSYL 307

  Fly   151 DA---TDSDVNLEEIDLPDEDGLESDHDLPNVQIH------KCDTCGIIKNNKSSLVRHQFEHNG 206
            :|   |.|...|.|.....|....|.....||:.|      :|..||......:.|..|...|.|
Human   308 EAHRKTQSGEKLNEWKQCGEAFTHSTSHAVNVETHIIKNPYECKECGKDFRYPTHLNNHMQTHIG 372

  Fly   207 IRPYPCKECPKTFLVASELKAHNLTHHTLEPPFACRYCDRRYFSVVGRKKHERVHTNERPFVCDQ 271
            |:||.||.|.|||.|.|....|..| ||.|.|:.|:.|.:.:.:..|..:|.|.|..|:.|.||.
Human   373 IKPYKCKHCGKTFTVPSGFLEHVRT-HTGEKPYGCKECGKAFGTSAGLIEHIRCHAREKTFKCDH 436

  Fly   272 CGKAFTRTCILKAHMAVHQ-------------------VV---------RKYSCDVCDRSF---- 304
            |||||.....|..|:.||.                   |:         :::.||.|.:.|    
Human   437 CGKAFISYPSLFGHLRVHNGEKPYEHKEYGKAFGTSSGVIEDRRSNTGQKRFDCDQCGKVFVSFS 501

  Fly   305 SLKKHLATH 313
            ||..||.||
Human   502 SLFAHLRTH 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nomNP_001262384.1 zf-AD 5..76 CDD:214871 12/54 (22%)
C2H2 Zn finger 184..204 CDD:275368 5/19 (26%)
C2H2 Zn finger 212..261 CDD:275368 19/48 (40%)
zf-H2C2_2 255..278 CDD:290200 12/22 (55%)
C2H2 Zn finger 269..289 CDD:275368 9/19 (47%)
zf-H2C2_2 282..305 CDD:290200 9/54 (17%)
C2H2 Zn finger 297..313 CDD:275368 8/19 (42%)
ZNF560NP_689689.2 KRAB 13..69 CDD:214630
KRAB 13..50 CDD:279668
KRAB 110..161 CDD:214630
KRAB 110..149 CDD:279668
C2H2 Zn finger 294..314 CDD:275368 2/19 (11%)
C2H2 Zn finger 323..342 CDD:275368 4/18 (22%)
COG5048 344..754 CDD:227381 54/168 (32%)
C2H2 Zn finger 350..370 CDD:275368 5/19 (26%)
zf-H2C2_2 362..386 CDD:290200 12/23 (52%)
C2H2 Zn finger 378..398 CDD:275368 10/20 (50%)
C2H2 Zn finger 406..426 CDD:275368 5/19 (26%)
C2H2 Zn finger 434..454 CDD:275368 9/19 (47%)
C2H2 Zn finger 490..510 CDD:275368 8/19 (42%)
zf-H2C2_2 502..527 CDD:290200 6/9 (67%)
C2H2 Zn finger 518..538 CDD:275368
zf-H2C2_2 531..554 CDD:290200
C2H2 Zn finger 546..566 CDD:275368
zf-H2C2_2 558..582 CDD:290200
C2H2 Zn finger 574..594 CDD:275368
zf-H2C2_2 586..610 CDD:290200
zf-C2H2 600..622 CDD:278523
C2H2 Zn finger 602..622 CDD:275368
C2H2 Zn finger 630..650 CDD:275368
C2H2 Zn finger 658..678 CDD:275368
C2H2 Zn finger 714..734 CDD:275368
zf-H2C2_2 726..751 CDD:290200
C2H2 Zn finger 742..762 CDD:275368
zf-H2C2_2 757..779 CDD:290200
C2H2 Zn finger 770..790 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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