DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nom and zscan2

DIOPT Version :10

Sequence 1:NP_649821.2 Gene:nom / 41038 FlyBaseID:FBgn0037617 Length:370 Species:Drosophila melanogaster
Sequence 2:XP_002943732.2 Gene:zscan2 / 100486661 XenbaseID:XB-GENE-6033591 Length:491 Species:Xenopus tropicalis


Alignment Length:138 Identity:59/138 - (42%)
Similarity:80/138 - (57%) Gaps:1/138 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 CDTCGIIKNNKSSLVRHQFEHNGIRPYPCKECPKTFLVASELKAHNLTHHTLEPPFACRYCDRRY 248
            |.|||...:.||.|::|...|.|.||:||.||.|:|...|.|..|:.. ||.|.||||..|.:|:
 Frog   184 CTTCGKRFSQKSLLIQHHRNHTGERPFPCIECGKSFTSCSLLIRHHKI-HTGEKPFACSDCGKRF 247

  Fly   249 FSVVGRKKHERVHTNERPFVCDQCGKAFTRTCILKAHMAVHQVVRKYSCDVCDRSFSLKKHLATH 313
            .......:|:|.||.|||:.|.:|||:|:.:..|..|...|...|.|||..|.:|||::.||.||
 Frog   248 SESSQLVRHQRTHTGERPYTCIECGKSFSESSKLVIHQRTHTGERPYSCSDCGKSFSVRSHLITH 312

  Fly   314 FISNTHKR 321
            ..::|.:|
 Frog   313 KRTHTGER 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nomNP_649821.2 zf-AD 5..76 CDD:214871
C2H2 Zn finger 184..204 CDD:275368 8/19 (42%)
C2H2 Zn finger 212..261 CDD:275368 19/48 (40%)
C2H2 Zn finger 269..289 CDD:275368 7/19 (37%)
C2H2 Zn finger 297..313 CDD:275368 7/15 (47%)
zscan2XP_002943732.2 COG5048 <68..314 CDD:227381 57/130 (44%)
C2H2 Zn finger 184..204 CDD:275368 8/19 (42%)
COG5048 208..>471 CDD:227381 49/114 (43%)
C2H2 Zn finger 212..232 CDD:275368 8/20 (40%)
C2H2 Zn finger 240..260 CDD:275368 5/19 (26%)
C2H2 Zn finger 268..288 CDD:275368 7/19 (37%)
C2H2 Zn finger 296..316 CDD:275368 9/19 (47%)
C2H2 Zn finger 324..344 CDD:275368
C2H2 Zn finger 352..372 CDD:275368
C2H2 Zn finger 380..400 CDD:275368
C2H2 Zn finger 408..428 CDD:275368
C2H2 Zn finger 436..456 CDD:275368
C2H2 Zn finger 464..484 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.