DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hb and Rest

DIOPT Version :10

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_113976.2 Gene:Rest / 83618 RGDID:621069 Length:1069 Species:Rattus norvegicus


Alignment Length:978 Identity:180/978 - (18%)
Similarity:278/978 - (28%) Gaps:407/978 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 PPGLPN------------PMQHF--------YGGNLRPSPQPTPTSASTIAPVAVATGSSEKLQA 176
            |.||.|            |...|        |..|..|:|:         ||||     .:|.:.
  Rat   102 PSGLDNMELRSLELSVVEPQPVFEASAAPEVYSSNKDPAPE---------APVA-----EDKCKN 152

  Fly   177 L-TPPMDVTPPKSPAKSSQSNIEPEKEHDQ----MSNSSEDMKYMAE-----SEDDD-------- 223
            | ..|....|.:..|:|.:..:...:.|..    :..|:|......|     ||:.:        
  Rat   153 LKAKPFRCKPCQYEAESEEQFVHHIRVHSAKKFFVEESAEKQAKARESGASPSEEGEFSKGPIRC 217

  Fly   224 ------TNIRMPIYNSHGK--------MKNYKCKTCGVVAITKVDFWAHTRTHMKPDKILQCPK- 273
                  || |...|.:|.|        .:.|||..|....:::..:..|.|.|. |.|:..|.| 
  Rat   218 DRCGYNTN-RYDHYTAHLKHHLRAGDNERVYKCIICTYTTVSEYHWRKHLRNHF-PRKVYTCSKC 280

  Fly   274 ---------------------------CPFVTEFKHHLEYHIRKHKNQKPFQCDKCSYTCVNKSM 311
                                       ||:.:..|.||..|:|.|..:|||:||:|:|...|:..
  Rat   281 NYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCDQCNYVASNQHE 345

  Fly   312 LNSH-RKSHSSVYQYRCADCDYATKYCHSFKLHLR-----------------------KYGHK-- 350
            :..| |:.|:......|..|||.|....:||.|:.                       :|..|  
  Rat   346 VTRHARQVHNGPKPLNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDYAASKKCNLQYHFKSK 410

  Fly   351 ----PGMVLD------------------------------------------------------- 356
                |...:|                                                       
  Rat   411 HPTCPSKTMDVSKVKLKKTKRREADLHRDAAAAATEQTDTEQAKTKGVDASARRSERPVKGVGKD 475

  Fly   357 --EDGTP--NPSLVIDVYGTRRGPKSKNG--GPIASGGSGSGSRKSNVAAVAPQQQQSQ---PAQ 412
              ::..|  |.|:|.....||:.......  |....|.:|:.:.||:.|..:.::..::   .|:
  Rat   476 VPKEKKPCSNASVVQVTTRTRKSAVETKAAEGKHTDGQTGNNAEKSSKAKKSKRKMDAEAHPSAE 540

  Fly   413 PV-------------------------------ATSQLSAALQ---------------------- 424
            ||                               |..|.||:::                      
  Rat   541 PVTEGPVTKKKKTESKPKTSGEVPKGSRVEDRKADKQQSASIKKGGKKTALKTKTAKKGSKLAPK 605

  Fly   425 -------GFPLVQGNSAP-PA----------------ASPV---------------------LPL 444
                   ...:.||..:| ||                :||:                     .||
  Rat   606 GVGHTEPSSEMAQGGESPVPALTQAVVTPSGSTQTELSSPMDIAQTEPAQMDVSQTGPPQVQRPL 670

  Fly   445 PASPAK------------------------------SVASVEQTPSL-PS----PANLLPPLASL 474
            |..||:                              ..|.:|.:|.: ||    |.:|.|||...
  Rat   671 PVEPAQLEPSPPQEPPQVEPPACVEPPPPVEPPCPMEPAEMEPSPPMEPSQVEPPPHLEPPLPME 735

  Fly   475 LQQNRNMAFFPYWNLNLQMLAAQQQAAVLAQLSPRMREQLQQQNQQQSD--------NEEEEQDD 531
            |.|   :...|..:...::.:.:.....:||..|.....:|::....|:        .....:|.
  Rat   736 LPQ---VELPPVEDCQKELPSVEHAQTKVAQTGPTQVGAVQEEPLSVSEPPQVKLTRRSSPRKDR 797

  Fly   532 EYERKSVDSAMDLSQG-------TPVKEDE---------QQQQPQQPLAMNLKVEEEATPL---M 577
            ..|:.||.|.|...:.       .||::.:         ....|..||... .:..|.||.   |
  Rat   798 AKEKLSVLSEMARQEQVLIEVGLVPVRDSQLLKASKSAPDLPAPPSPLPKG-HLRREETPKDQEM 861

  Fly   578 SSSNASRRKGRVLKLDTLLQLRSEAMTSPEQLKVPSTPMPTASSPIAGRKPMPE---EHCSGTSS 639
            .|.....:...:.|..|     .||..|..:|..|.......||..:...|..|   ..|...|:
  Rat   862 FSDGEGNKVSPLEKGGT-----EEAGESRAELAAPMESTSALSSEQSSNAPDGETLHSECQADST 921

  Fly   640 A------DESMETAHV--------------PQANTSASSTA----------------SSSGNSSN 668
            |      |...:|..|              |:.:..|::.|                ...|..|:
  Rat   922 AVCEMEVDTEQKTDRVPLKDSAVEPVSPLNPRVDPEAAAPAVVASPPITLAESQEIDEDEGIHSH 986

  Fly   669 ASSNSNGNSSSNSSSNGTTSAVAAP-----PSGTPAAAGAIYE----CKYCDIFFKDAVLYTIHM 724
            ..|:.:.|.|..|..:|...|..||     .||....|..:.|    |.:||..|:....|:.|:
  Rat   987 DGSDLSDNMSEGSDDSGLHGARPAPQEATSKSGKEGLAVKVTEGEFVCIFCDRSFRKEKDYSKHL 1051

  Fly   725 GYH 727
            ..|
  Rat  1052 NRH 1054

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 4/19 (21%)
C2H2 Zn finger 271..291 CDD:275368 9/47 (19%)
zf-H2C2_2 283..308 CDD:463886 12/24 (50%)
C2H2 Zn finger 299..319 CDD:275368 7/20 (35%)
C2H2 Zn finger 327..345 CDD:275368 8/17 (47%)
C2H2 Zn finger 707..727 CDD:275371 6/19 (32%)
C2H2 Zn finger 735..757 CDD:275371
RestNP_113976.2 C2H2 Zn finger 249..269 CDD:275368 4/19 (21%)
COG5048 <270..413 CDD:227381 33/143 (23%)
C2H2 Zn finger 277..297 CDD:275368 2/19 (11%)
zf-H2C2_2 289..314 CDD:463886 2/24 (8%)
zf-H2C2_5 303..327 CDD:404746 8/23 (35%)
C2H2 Zn finger 305..325 CDD:275368 7/19 (37%)
zf-H2C2_2 317..342 CDD:463886 12/24 (50%)
C2H2 Zn finger 333..351 CDD:275368 6/17 (35%)
C2H2 Zn finger 390..406 CDD:275368 0/15 (0%)
Blue background indicates that the domain is not in the aligned region.

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