DRSC/TRiP Functional Genomics Resources

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Protein Alignment hb and ovo

DIOPT Version :10

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_726971.1 Gene:ovo / 31429 FlyBaseID:FBgn0003028 Length:1351 Species:Drosophila melanogaster


Alignment Length:485 Identity:94/485 - (19%)
Similarity:147/485 - (30%) Gaps:163/485 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 NYEQHNAWYNSMFAANIKQEPGHHLDGNSVASSP--RQSPIPSTNHLEQFLKQQQQ--------- 64
            :::||..........:::|:..|::.........  :|.|.||..|..:.|..|||         
  Fly   841 HHQQHGVQQQQQQQHSVQQQQQHNVQQQHGVQQQHVQQQPPPSYQHATRGLMMQQQPQHGGYQQQ 905

  Fly    65 -----QLQQQPMDTLCAMTPSPSQNDQNSLQHYDANLQQ-----QLLQQQQYQQHFQAAQQQHHH 119
                 |.|||    |.:.....|.:.|...|.:.|..||     |..||||.|.|.|..||||||
  Fly   906 AAIMSQQQQQ----LLSQQQQQSHHQQQQQQQHAAAYQQHNIYAQQQQQQQQQHHQQQQQQQHHH 966

  Fly   120 HHHLMGGFNPLTPPGLPNPMQHF-------YGGNLRPSPQPTPTSASTIAPVAVATGSSEKLQ-- 175
            .||        .....|.|..|.       :..:....|.||..:|:..|..|.|..::..||  
  Fly   967 FHH--------QQQQQPQPQSHHSHHHGHGHDNSNMSLPSPTAAAAAAAAAAAAAAAAAAHLQRP 1023

  Fly   176 -------------------ALTPPMDVT---------------------PP-------------K 187
                               :.:|.:|..                     ||             |
  Fly  1024 MSSSSSSGGTNSSNSSGGSSNSPLLDANAAAAAAAALLDTKPLIQSLGLPPDLQLEFVNGGHGIK 1088

  Fly   188 SP----------------------------AKSSQSNIEPEKEHDQMS---------NSSEDMKY 215
            :|                            ::..|....|::::.|.|         .|.:..:.
  Fly  1089 NPLAVENAHGGHHRIRNIDCIDDLSKHGHHSQHQQQQGSPQQQNMQQSVQQQSVQQQQSLQQQQQ 1153

  Fly   216 MAESEDDDTNIRMPIYNSHGKMK-------------------NYKCKTCGVVAITKVDFWAHTRT 261
            ....:....:......:|||..:                   .:.|:.|......:.....|.:.
  Fly  1154 QQHHQHHSNSSASSNASSHGSAEALCMGSSGGANEDSSSGNNKFVCRVCMKTFSLQRLLNRHMKC 1218

  Fly   262 HMKPDKILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKCSYTCVNKSMLNSH-RKSHSSVYQY 325
            |....:.| |..|.........|:.|.|.|...:|::|:.|..:...:..|.|| :|.||..:||
  Fly  1219 HSDIKRYL-CTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCQKVHSVQHQY 1282

  Fly   326 R----------CADCDYATKYCHSFKLHLR 345
            .          |.:|.:.|.......|||:
  Fly  1283 AYKERRAKMYVCEECGHTTCEPEVHYLHLK 1312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 3/19 (16%)
C2H2 Zn finger 271..291 CDD:275368 5/19 (26%)
zf-H2C2_2 283..308 CDD:463886 7/24 (29%)
C2H2 Zn finger 299..319 CDD:275368 6/20 (30%)
C2H2 Zn finger 327..345 CDD:275368 5/17 (29%)
C2H2 Zn finger 707..727 CDD:275371
C2H2 Zn finger 735..757 CDD:275371
ovoNP_726971.1 C2H2 Zn finger 1199..1219 CDD:275368 3/19 (16%)
zf-H2C2_2 1212..1235 CDD:463886 5/23 (22%)
C2H2 Zn finger 1227..1247 CDD:275368 5/19 (26%)
zf-H2C2_2 1239..1264 CDD:463886 7/24 (29%)
C2H2 Zn finger 1255..1276 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.

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