DRSC/TRiP Functional Genomics Resources

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Protein Alignment hb and Plagl2

DIOPT Version :10

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001388738.1 Gene:Plagl2 / 296281 RGDID:1307999 Length:496 Species:Rattus norvegicus


Alignment Length:379 Identity:80/379 - (21%)
Similarity:122/379 - (32%) Gaps:136/379 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 HGKMKNYKCKT--CGVVAITKVDFWAHTRTH--MKPDKILQCPKCPFVTEFKHHLEYHIRKH-KN 293
            |.:.:.|.|..  ||....:|...:.|..||  .||.   ||..|..:...|.||..|::.| .|
  Rat    62 HPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPH---QCMYCDKMFHRKDHLRNHLQTHDPN 123

  Fly   294 QKPFQCDKCS-----------------------------YTCVNKSMLNSHRKSHS-------SV 322
            ::...|.:|.                             .|..:...|..|.|:||       ..
  Rat   124 KEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSRRVAGGAKE 188

  Fly   323 YQYRCADC---------------------DYATKYC------------HSFKLH---LRKYGHKP 351
            .::.|..|                     |:..:||            |..|.|   |.|...:|
  Rat   189 KKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKKSHSQELLKIKTEP 253

  Fly   352 ----GMV-------LDEDGTPNPSLVI-DVYGTRRGPKSKNGGPIASGGSG--------SGSRKS 396
                |::       :.|:.:|...:.. |:.|.:..|     |.:..|..|        :|...|
  Rat   254 VDMLGLLSCSSTVSVKEELSPVLCMASRDMMGAKAFP-----GMLPMGMYGAHIPTMPSAGMPHS 313

  Fly   397 NVAAVAPQQQQSQPAQPVATSQLSAALQGFPLVQGNSAP------------------PAA---SP 440
            .|....|...    :.|:.:|.:|::.|..|..|..|..                  |.:   |.
  Rat   314 LVHNTLPMGM----SYPLESSPISSSAQLPPKYQLGSTSYLPDKLPKVEVDSFLAELPGSLSLSS 374

  Fly   441 VLPLPAS--PAKSVASVEQTPSLPSPANLLPPL-ASLLQQNRNMAFFPYWNLNL 491
            ..|.|||  ||.:.|.:::.....|||||...| |:.:..:..:.|.|   |||
  Rat   375 AEPQPASPQPAAAAALLDEALLTKSPANLSEALCAANVDFSHLLGFLP---LNL 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 5/21 (24%)
C2H2 Zn finger 271..291 CDD:275368 6/19 (32%)
zf-H2C2_2 283..308 CDD:463886 8/54 (15%)
C2H2 Zn finger 299..319 CDD:275368 6/48 (13%)
C2H2 Zn finger 327..345 CDD:275368 8/53 (15%)
C2H2 Zn finger 707..727 CDD:275371
C2H2 Zn finger 735..757 CDD:275371
Plagl2NP_001388738.1 C2H2 Zn finger 42..62 CDD:275368 80/379 (21%)
C2H2 Zn finger 70..92 CDD:275368 5/21 (24%)
zf-H2C2_2 85..107 CDD:463886 8/24 (33%)
zf-C2H2 98..120 CDD:395048 7/24 (29%)
C2H2 Zn finger 100..120 CDD:275368 6/19 (32%)
C2H2 Zn finger 129..149 CDD:275368 2/19 (11%)
C2H2 Zn finger 158..178 CDD:275368 4/19 (21%)
C2H2 Zn finger 193..213 CDD:275368 2/19 (11%)
C2H2 Zn finger 221..239 CDD:275368 3/17 (18%)
Blue background indicates that the domain is not in the aligned region.

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