DRSC/TRiP Functional Genomics Resources

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Protein Alignment hb and Zscan5b

DIOPT Version :10

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_218239.6 Gene:Zscan5b / 292566 RGDID:1559143 Length:484 Species:Rattus norvegicus


Alignment Length:353 Identity:77/353 - (21%)
Similarity:116/353 - (32%) Gaps:77/353 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 HLDGNSVASSPRQSPIPSTNHLEQFLKQQQQQLQQQPMDTLCAMTPSPSQNDQNSLQHYDANLQQ 98
            |....|..|..|...||...:|.:..::                 ||.||.:...|......:||
  Rat   158 HQSNESKESLYRGQAIPELQNLSEETEE-----------------PSTSQEENILLGLIPGRVQQ 205

  Fly    99 QLLQQQQYQQHFQAAQQQHHHHHHLMGGFNP-------LTPPGL-PNPMQHFYGG---NLRPSPQ 152
            ..|:.:                |.|..|..|       ..|.|. |:|.|    |   :||....
  Rat   206 DYLRPE----------------HSLGNGSVPDWEEAGASVPVGQDPHPTQ----GPALSLREKGA 250

  Fly   153 PTPTSASTIAPVAVATGSSEKLQALTPPMDV--------TPPKSPAKSSQSNIE-------PEKE 202
            ..|...:.:..|..:|...|:..||...:..        .|......|...|.|       ||..
  Rat   251 MQPQEYTVVGAVPSSTHIRERYLALNRDLQSLRSFGGFNLPTSQGVASYTGNAEDRLKTANPETA 315

  Fly   203 HDQMSNSSEDMKYMAESEDDDTNIRMPIYNSHGKM--------KNYKCKTCGVVAITKVDFWAHT 259
            |.|.......:...|:.:..... :..:|.||..:        :.:||..|....:...|...|.
  Rat   316 HPQPVEQVNTLAGQAQFQCPQCK-KSFLYKSHFTLHWRSHTGERPFKCNLCNKAFLQPSDLRVHR 379

  Fly   260 RTHMKPDKILQCPKCPFVTEFKH--HLEYHIRKHKNQKPFQCDKCSYTCVNKSMLNSHRKSHSSV 322
            |.| ..:|...|..|.  .||.|  .|:.|.|.|..:||:.|:.|.....:|..|..|.:.|..:
  Rat   380 RVH-TGEKPYSCEVCG--KEFAHGSTLQGHSRVHTKEKPYVCENCGQCFSHKGNLTVHFRIHCGL 441

  Fly   323 YQYRCADCDYATKYCHSFKLHLRKYGHK 350
            ..|.|..|:.|.:...::|.|::.:..|
  Rat   442 RPYICKKCNKAFRQQGTWKRHMKTHWKK 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 5/19 (26%)
C2H2 Zn finger 271..291 CDD:275368 8/21 (38%)
zf-H2C2_2 283..308 CDD:463886 8/24 (33%)
C2H2 Zn finger 299..319 CDD:275368 5/19 (26%)
C2H2 Zn finger 327..345 CDD:275368 5/17 (29%)
C2H2 Zn finger 707..727 CDD:275371
C2H2 Zn finger 735..757 CDD:275371
Zscan5bXP_218239.6 SCAN 33..112 CDD:153421
COG5048 <261..>432 CDD:227381 39/174 (22%)
C2H2 Zn finger 334..354 CDD:275368 3/20 (15%)
SFP1 <356..411 CDD:227516 16/57 (28%)
C2H2 Zn finger 362..382 CDD:275368 5/19 (26%)
zf-H2C2_2 374..399 CDD:463886 9/27 (33%)
C2H2 Zn finger 390..410 CDD:275368 8/21 (38%)
zf-C2H2 416..438 CDD:395048 5/21 (24%)
C2H2 Zn finger 418..438 CDD:275368 5/19 (26%)
zf-C2H2 444..466 CDD:395048 6/21 (29%)
C2H2 Zn finger 446..466 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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