DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hb and Zfp496

DIOPT Version :9

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_006246512.1 Gene:Zfp496 / 287361 RGDID:1304611 Length:580 Species:Rattus norvegicus


Alignment Length:405 Identity:85/405 - (20%)
Similarity:135/405 - (33%) Gaps:130/405 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IKQEPGHHLDGNSVASSPRQSPIPSTNHLEQFLKQQQQQLQQQPMDTLCAMTP---SP------- 81
            :.|:||  |...| ...|.:.|:|.    :..|.|:|.....||: |.|.:.|   ||       
  Rat   171 LAQDPG--LLSRS-PGQPSEDPVPQ----DAVLSQEQSVRDAQPV-TTCQLPPNRVSPFKDMILC 227

  Fly    82 -SQNDQNSLQHYDANLQQQLLQQQQYQQHF---QAAQQQHHHHHHLMG----GFNPLTPPGLPN- 137
             |:.|.:.|.........:.:..:.|....   ::..|..|.|....|    .:..|.....|. 
  Rat   228 FSEEDWSLLDPAQTGFYGEFIIGEDYAVSMPPNESPVQLGHSHEEENGLRVTEWTDLQDKEAPQA 292

  Fly   138 ---PMQHFYGGNLR-----PSPQPTPTSASTIAPVAVATGSSEKLQALTPPMDVTPPKSPAKSSQ 194
               .:|.|.|...:     ..|:|.......:.|.....|..      .||:            :
  Rat   293 SCIDLQPFQGEERKKWEELQVPEPQSCQQVVLPPSPCPAGGD------PPPL------------K 339

  Fly   195 SNIEPEKEHDQMSNSS--EDMKYMAESEDDDTNIRMPIYNSH----------------GKMKNYK 241
            :|::.|...:.:.:||  ||.::.....::   :|.|..|.|                ...|:|.
  Rat   340 NNLDQEVTIEIVLSSSGDEDSQHSPYCTEE---LRSPPENLHSLPAPQSNTRPGGEVQSSQKSYV 401

  Fly   242 CKTCGVVAITKVDFWAH--TRTHMKPDKILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKCSY 304
            |.:||.....:|:|..|  :|...||.|   |..|..:......|:.|:..|:.|||::|..|  
  Rat   402 CPSCGKAFRWRVNFIRHLRSRREQKPHK---CSVCGELFSDSEDLDGHLETHEAQKPYRCTVC-- 461

  Fly   305 TCVNKSM-LNSHRKSHSSVY-----------------------------------QYRCADC--- 330
               .||. ||||..||..::                                   .::||||   
  Rat   462 ---GKSFRLNSHLISHQRIHLQPDKQQPLKKNEEDSLETESTGTNDLLEKSKAKLGFQCADCEKS 523

  Fly   331 ----DYAT---KYCH 338
                ||..   ::||
  Rat   524 FQRHDYLVRHRRHCH 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 7/21 (33%)
C2H2 Zn finger 271..291 CDD:275368 4/19 (21%)
zf-H2C2_2 283..308 CDD:290200 8/24 (33%)
C2H2 Zn finger 299..319 CDD:275368 8/20 (40%)
C2H2 Zn finger 327..345 CDD:275368 8/22 (36%)
C2H2 Zn finger 707..727 CDD:275371
C2H2 Zn finger 735..757 CDD:275371
Zfp496XP_006246512.1 SCAN 50..126 CDD:280241
KRAB_A-box 220..>248 CDD:143639 4/27 (15%)
COG5048 <332..568 CDD:227381 51/236 (22%)
C2H2 Zn finger 402..422 CDD:275368 6/19 (32%)
C2H2 Zn finger 430..450 CDD:275368 4/19 (21%)
zf-H2C2_2 442..465 CDD:290200 9/27 (33%)
zf-C2H2 456..478 CDD:278523 10/26 (38%)
C2H2 Zn finger 458..478 CDD:275368 10/24 (42%)
C2H2 Zn finger 517..538 CDD:275370 6/20 (30%)
zf-C2H2 546..568 CDD:278523
C2H2 Zn finger 548..568 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350852
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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