DRSC/TRiP Functional Genomics Resources

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Protein Alignment hb and Zkscan17

DIOPT Version :10

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_766529.3 Gene:Zkscan17 / 268417 MGIID:2679270 Length:585 Species:Mus musculus


Alignment Length:416 Identity:91/416 - (21%)
Similarity:140/416 - (33%) Gaps:119/416 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PGHHLDGNSVAS-SPRQSPIPSTNHLEQ--FLKQQQQQLQQQPMDTLCAMTP---SP-------- 81
            ||..:.|..:.| ||.|   ||.:.:.|  |:.|:|.....||:.| |.:.|   ||        
Mouse   169 PGALVQGTGLLSRSPGQ---PSEDLVPQDAFVVQEQSIRDAQPVAT-CQLPPNRVSPFKDMILCF 229

  Fly    82 SQNDQNSLQHYDANLQQQLLQQQQYQQHFQAAQQ--QHHHHHHLMGGF------NPLTPPGLP-- 136
            |:.|.:.|.........:.:..:.|.......:.  |..|.|....|.      ..|....:|  
Mouse   230 SEEDWSLLDPAQTGFYGEFIIGEDYAVSMPPNEPPVQPGHSHEEENGLRVTEWTTDLQDKEIPQA 294

  Fly   137 -----NPMQHFYG-----------GNLRPSPQ------PTPTSASTIAPVAVATGSSEKLQ---A 176
                 :.:|.|.|           ..|:|.||      |.|....   |.|:.:...:::.   .
Mouse   295 SCLDLSSLQPFQGEERRKWEELQVPELQPCPQVVLSQSPCPAGGD---PPALKSSLDQEVTIEIV 356

  Fly   177 LTPPMDVTPPKSPAKSSQSNIEPEKEHD---QMSNSSEDMKYMAESEDDDTNIRMPIYNSHGKMK 238
            |:...|.....||..:.:....||..|.   ..||:|      ||.|...:            .|
Mouse   357 LSSSGDEDSQHSPYCTEELRSPPEDLHSVPAHQSNAS------AEGEVQTS------------QK 403

  Fly   239 NYKCKTCGVVAITKVDFWAH--TRTHMKPDKILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDK 301
            :|.|..||.:...:|:|..|  :|...||.|   |..|..:......|:.|:..|:.|||::|..
Mouse   404 SYVCPNCGKIFRWRVNFIRHLRSRREQKPHK---CSVCGELFSDSEDLDGHLETHEAQKPYRCTA 465

  Fly   302 CSYTCVNKSMLNSHRKSH-------------------------------SSVYQYRCADCDYATK 335
            |..:....|.|.|||:.|                               .:...::|.||:    
Mouse   466 CGKSFRLNSHLISHRRIHLQPASQQPMKKSEEEALETEGTGASDLLEKSKAKLSFQCGDCE---- 526

  Fly   336 YCHSFKLHLRKYGHKPGMVLDEDGTP 361
              .||:.|.....|:....|.::..|
Mouse   527 --KSFQRHDHLVRHRRHCHLKDETRP 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 7/21 (33%)
C2H2 Zn finger 271..291 CDD:275368 4/19 (21%)
zf-H2C2_2 283..308 CDD:463886 8/24 (33%)
C2H2 Zn finger 299..319 CDD:275368 7/19 (37%)
C2H2 Zn finger 327..345 CDD:275368 6/17 (35%)
C2H2 Zn finger 707..727 CDD:275371
C2H2 Zn finger 735..757 CDD:275371
Zkscan17NP_766529.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41
SCAN 50..126 CDD:460417
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 141..167
KRAB_A-box 221..>249 CDD:470626 4/27 (15%)
COG5048 <337..573 CDD:227381 52/244 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 358..397 11/44 (25%)
C2H2 Zn finger 407..427 CDD:275368 6/19 (32%)
C2H2 Zn finger 435..455 CDD:275368 4/19 (21%)
C2H2 Zn finger 463..483 CDD:275368 7/19 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 483..506 1/22 (5%)
C2H2 Zn finger 522..543 CDD:275368 7/26 (27%)
C2H2 Zn finger 553..573 CDD:275368
Nuclear localization signal 575..579
Blue background indicates that the domain is not in the aligned region.

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