DRSC/TRiP Functional Genomics Resources

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Protein Alignment hb and Zscan18

DIOPT Version :9

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_011248809.1 Gene:Zscan18 / 232875 MGIID:3643810 Length:864 Species:Mus musculus


Alignment Length:746 Identity:130/746 - (17%)
Similarity:234/746 - (31%) Gaps:265/746 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 EQFLKQQQQQLQQQPMDTLCAMTPSPSQNDQNSLQHYDANLQQQLLQQQQYQQHFQAAQQQHHHH 120
            |:|: ||::.:||    ...:....|||.:::| |..:::.|::|.||::..|..|..||:    
Mouse   265 EEFI-QQEKPIQQ----VRFSEQEEPSQQEESS-QQEESSQQEELSQQKESSQKAQPYQQE---- 319

  Fly   121 HHLMGGFNPLTPPGLPNPMQHFYGGNLRPSPQPTPTSASTIAPVAVATGSSEKLQALTPPMDVTP 185
                                       .||.|..|:.            ..:..|...|.....|
Mouse   320 ---------------------------EPSQQQEPSQ------------KDQPSQQEEPSQQQEP 345

  Fly   186 PKSPAKSSQSNIEPEKE---HDQMSNSSEDMKYMAESEDDDTNIRMPIYNSHGKMKNYKCKTCGV 247
            .:....|.|..:..::|   .||.:...|..:....|:.|..|.:..:.......:..:|     
Mouse   346 SQKDQPSQQEELSQQEEPSQKDQCNQQEEPSQQQEPSQKDQPNQQAELSQQEEPSQKDQC----- 405

  Fly   248 VAITKVDFWAHTRTHMKPDKILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKCSYTCVNKSML 312
                        ....:|.:..||                   .:.::|.|.|:     .|:...
Mouse   406 ------------NQQEEPSQKDQC-------------------KQQEEPSQKDQ-----PNQQEE 434

  Fly   313 NSHRKSHSSVYQYRCADCDYATKYCHSFKLHLRKYGHKPGMVLDEDGTPNPSL--VIDVYGTRRG 375
            .|..|...::.:...||.:::       :|..|::      |..|...|:.:|  :.::......
Mouse   435 PSQLKETETITERSAADLEFS-------RLRFREF------VYQEAAGPHQTLARLHELCRQWLR 486

  Fly   376 PKSKNGGPIASGGSGSGSRKSNVAAVAPQQQ-------QSQP---AQPVATSQLSAALQGFPLVQ 430
            |::              ..|..:..:...:|       :.:|   ||.....:.:|:     ||:
Mouse   487 PEA--------------CSKEQILELLVLEQFLGILPDRVRPWVVAQYPENCKKAAS-----LVE 532

  Fly   431 GNSAPPAASPVLPLP----ASPAKSVASVEQTPSLPSPANLLPPLASLLQQNRNM---------- 481
            |      .|.:|..|    .||..|.:|..:......|..||.| ..||..|||:          
Mouse   533 G------ISDILEEPGMMLCSPGGSSSSFSEGDYERCPEPLLLP-CGLLSPNRNLRPRDILVRRD 590

  Fly   482 --AFFPYWNLNLQMLAAQQQA----------AVLAQL---------------------------- 506
              ...|.|. .|:.:...|:.          |..|:|                            
Mouse   591 TSPLLPAWP-TLESVHLDQERTEGEKSKEANAATAELKGPLQSEWDHLDPTEDNLTSYSKLLLWG 654

  Fly   507 ---------------SPRMREQLQQQNQQQSDNEEEEQDDEYERKSVDSAM--DLSQGTPVKED- 553
                           .|...|.|...:...|..::|.:.:..|..|:...:  .||...||... 
Mouse   655 CQFSQAGPTSMLETEEPCAVENLPGGSLPDSTRQQESKGNVCEEVSLGETLMESLSGDVPVSASI 719

  Fly   554 ----EQQQQPQQPLAMNLKVEEEATPLMSSSNASRRKGRVLKLDTLLQLRSEAMTSPEQLKVPST 614
                |::||||:  |::.:.|:       ||.||.::      .:::|..::....|.|......
Mouse   720 DTALEEEQQPQK--ALDAEGED-------SSPASPQR------QSVIQQSAQDKDRPHQGTGTKR 769

  Fly   615 PMPTASSPIAGRKPMPEEHCSGTSSADESMETAHVPQANTSASSTASSSGNSSNASSNSNGNSSS 679
            |.|                       |:..|.|....::||:......:|...:...:.:| ..|
Mouse   770 PHP-----------------------DDEDEMAPECLSSTSSYQLPFDAGKVLHVDGHDSG-QDS 810

  Fly   680 NSSSNGTTSAVAAPPSGTPAAAGAIYECKYC 710
            .:|:.|.:||     ..:.|:.|..|.|..|
Mouse   811 GTSAGGCSSA-----DKSDASQGKPYTCSEC 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 1/19 (5%)
C2H2 Zn finger 271..291 CDD:275368 1/19 (5%)
zf-H2C2_2 283..308 CDD:290200 3/24 (13%)
C2H2 Zn finger 299..319 CDD:275368 4/19 (21%)
C2H2 Zn finger 327..345 CDD:275368 3/17 (18%)
C2H2 Zn finger 707..727 CDD:275371 2/4 (50%)
C2H2 Zn finger 735..757 CDD:275371
Zscan18XP_011248809.1 PAT1 <55..>208 CDD:370676
SCAN 453..540 CDD:366881 18/124 (15%)
C2H2 Zn finger 833..853 CDD:275370 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847310
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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