DRSC/TRiP Functional Genomics Resources

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Protein Alignment hb and Zkscan2

DIOPT Version :10

Sequence 1:NP_731267.1 Gene:hb / 41032 FlyBaseID:FBgn0001180 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001074798.1 Gene:Zkscan2 / 210162 MGIID:2444060 Length:960 Species:Mus musculus


Alignment Length:123 Identity:42/123 - (34%)
Similarity:60/123 - (48%) Gaps:10/123 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 HGKMKNYKCKTCGVVAITKVDFWAHTRTHM--KPDKILQCPKCPFVTEFKH--HLEYHIRKHKNQ 294
            |...|.:||..||.......:|.||.|.|.  ||.:..:|.||     |..  .|..|.|.|..:
Mouse   790 HTGEKPFKCPDCGKSFNDSSNFGAHQRVHTGEKPYRCRECGKC-----FSQSSSLIIHQRTHTGE 849

  Fly   295 KPFQCDKCSYTCVNKSMLNSHRKSHSSVYQYRCADCDYATKYCHSFKLHLRKY-GHKP 351
            ||:||::|..:..|.|..::||:.|:....|:|.||:.:...|..|:.|.|.: |.||
Mouse   850 KPYQCEECGKSFTNSSHFSAHRRIHTEENPYKCGDCEKSFNNCARFREHQRIHNGEKP 907

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbNP_731267.1 C2H2 Zn finger 242..262 CDD:275368 7/19 (37%)
C2H2 Zn finger 271..291 CDD:275368 7/21 (33%)
zf-H2C2_2 283..308 CDD:463886 9/24 (38%)
C2H2 Zn finger 299..319 CDD:275368 6/19 (32%)
C2H2 Zn finger 327..345 CDD:275368 6/17 (35%)
C2H2 Zn finger 707..727 CDD:275371
C2H2 Zn finger 735..757 CDD:275371
Zkscan2NP_001074798.1 C2H2 Zn finger 882..902 CDD:275368 7/19 (37%)
C2H2 Zn finger 910..930 CDD:275368
SCAN 42..148 CDD:128708
KRAB <241..282 CDD:214630
Myb_DNA-bind_4 334..415 CDD:463994
Myb_DNA-bind_4 490..571 CDD:463994
COG5048 <766..915 CDD:227381 42/123 (34%)
C2H2 Zn finger 770..790 CDD:275368 42/123 (34%)
C2H2 Zn finger 798..818 CDD:275368 7/19 (37%)
C2H2 Zn finger 826..846 CDD:275368 7/24 (29%)
C2H2 Zn finger 854..874 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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