DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8032 and lsd1

DIOPT Version :9

Sequence 1:NP_001262380.1 Gene:CG8032 / 41026 FlyBaseID:FBgn0037606 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_595398.1 Gene:lsd1 / 2539805 PomBaseID:SPBC146.09c Length:1000 Species:Schizosaccharomyces pombe


Alignment Length:597 Identity:122/597 - (20%)
Similarity:217/597 - (36%) Gaps:152/597 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 IVIIGAGMAGLSAA---NHLLQNGCDDFL----------ILEARGRVGGRIVS--IPLSNNQKIE 91
            :.||||||||:|.|   .:|......|||          |.||..|:||.|.:  :|||:|:..|
pombe   260 VAIIGAGMAGISCARQLTNLFAQYEQDFLSRGEKPPRIVIYEASERLGGHIYTHMVPLSDNEVSE 324

  Fly    92 LGA-------------NWIHGVL-------GNPIFELAVQHGLVSVVNVPKPHKVVATTEDGHQV 136
            ..:             |.:...|       .:|::.::.|...:..|:......::...|:| ::
pombe   325 KSSLATTVNATNECMVNLLTDSLIGMPTLDSDPLYIISSQQLSLDAVHTRNREFILHDIENG-RI 388

  Fly   137 PFNILQEIYEAYVCFLRRCDEYFLCQYSPPPDIHSVGEHINYEIEIYLSGVQDPKEKRLKQSIFN 201
            ....:|.|:..:...|    .||....|..| :||:              :..|:::.:::    
pombe   389 DTEHVQRIFRLFDALL----FYFNASASKQP-LHSL--------------ITPPEQEFIQK---- 430

  Fly   202 CLLKRETCITGCNNMDEVDLLELGSYTELQGGNIVLPTGYSSILRPLGAQIAKQSILTKCPVKKI 266
                               |.::|.|..::...:.:....|..|......:.....||...:|..
pombe   431 -------------------LDQIGWYISIEAFPLQIKDTLSEFLGNSANTLTSLLHLTVLDLKIF 476

  Fly   267 HWKRKKTFTGL--------------------ETVDENSEDEHSDDSERTVTEVPTGE-------I 304
            .|.::.....|                    |.|...|......|...::...|:..       :
pombe   477 EWFKEYLSQSLSVSLENVYPGSIPNLNLLLGENVASYSFKHGMADMLNSLASTPSPLPILFDQCV 541

  Fly   305 RGASVESNTSSNCDYPAGNVRIDCEDGRVFHAAHVICTIPLGVLKNTHRTLFDPVLPQYKQESIE 369
            ....:|.||.:........|.:|          .|:..||:..| |||...|:|.|.:.|.::|:
pombe   542 HTVKLEDNTVNLSFVNETTVSVD----------KVVICIPMDKL-NTHLITFEPPLEEKKLKAID 595

  Fly   370 NLMFGTVDKIFLEYERPFLSADISEIMLLWDDDKRDMNSSEEELASEAYLSKNWFKKI--YSFAK 432
            ...|..|.|:.|.::..|...:||....|..|..|:...::.....| :.:.:.|.|:  ..|.|
pombe   596 RCHFTNVKKVILIFKTQFWEPNISIFGSLPQDSGRNFIFNDCTRFYE-HPTLSVFVKVEGIDFMK 659

  Fly   433 VTDTLLLGWVSGREAEYMEKLDHEAVAEKCTEILRNFLQDPYVPKPKRCVCTSWKSQDFTGGAYT 497
             .|.::.|.||..:..|..|  .||:                  .|.|.:.::|::..:|..:..
pombe   660 -DDDIVNGIVSQLKKVYKPK--SEAI------------------NPIRTIISNWENNSYTNHSSY 703

  Fly   498 SIPVGATQEDIENLAQPLYATPQAMKPAIVFAGEHTHSSFYSTVHGAYLSGRTAAQHLLAS---- 558
            .|.....:||...|::|:..|       :.||.|........::.||:.||..||:.:|||    
pombe   704 QISNLFLEEDYAILSEPIDNT-------VFFASEAISQKNSGSIRGAFDSGILAARDVLASLIGN 761

  Fly   559 -DEPDEIIMESD 569
             ..|:.:::|.:
pombe   762 VVLPNTLVIEEN 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8032NP_001262380.1 NAD_binding_8 44..104 CDD:290186 28/94 (30%)
Amino_oxidase 49..556 CDD:279874 112/570 (20%)
lsd1NP_595398.1 SWIRM 157..240 CDD:282311
NAD_binding_8 262..>316 CDD:290186 21/53 (40%)
Amino_oxidase 267..755 CDD:279874 112/570 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2622
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.900

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