DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8032 and kdm1a

DIOPT Version :9

Sequence 1:NP_001262380.1 Gene:CG8032 / 41026 FlyBaseID:FBgn0037606 Length:583 Species:Drosophila melanogaster
Sequence 2:XP_002936640.1 Gene:kdm1a / 100216250 XenbaseID:XB-GENE-5816927 Length:833 Species:Xenopus tropicalis


Alignment Length:602 Identity:152/602 - (25%)
Similarity:245/602 - (40%) Gaps:138/602 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 KIVIIGAGMAGLSAANHLLQNGCDDFLILEARGRVGGRIVSIPLSNNQKIELGANWIHGVLGNPI 105
            |::|||:|::||:||..|...|. |..:||||.|||||:.:. ...|...:|||..:.|:.|||:
 Frog   264 KVIIIGSGVSGLAAARQLQSFGM-DVTVLEARDRVGGRVATF-RKGNYVADLGAMVVTGLGGNPM 326

  Fly   106 FELAVQHGL-------------VSVVNVPKP----------HKVVATTEDGHQVPFNILQ----E 143
            ..::.|..:             .:...|||.          ..:.||:...||:.||||.    .
 Frog   327 AVISKQVNMELAKIKQKCPLYEANGQGVPKEKDEMVEQEFNRLLEATSYLSHQLDFNILNNKPVS 391

  Fly   144 IYEAYVCFLRRCDEYFLCQYSPPPDIHSVGEHINY---------EIEIYLSGVQDPKE--KRLKQ 197
            :.:|....::..::            |...|.|.:         |::..|:.:.:.||  |.|.|
 Frog   392 LGQALEVVIQLQEK------------HVKDEQIEHWKKIVKTQDELKELLNKMVNVKEKIKELHQ 444

  Fly   198 SI---------------FNCLLKRETCITGCNNMDEVDLLELGSYTELQ------GGNIVLPTGY 241
            ..               |....|.......|...|::...::....:||      ..::.|.:..
 Frog   445 QYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDQLAETQVKLEEKLQELEANPPSDVYLSSRD 509

  Fly   242 SSIL--RPLGAQIAKQSILTKCPVKKIHWKRKKTFTGLETVDENSEDEHSDDSERTVTE----VP 300
            ..||  .....:.|..:.|:...:|  ||             :..:|.....|..||..    ||
 Frog   510 RQILDWHFANLEFANATPLSTLSLK--HW-------------DQDDDFEFTGSHLTVRNGYSCVP 559

  Fly   301 TGEIRGASVESN--------TSSNCDYPAGNVRIDCEDGRVFHAAHVICTIPLGVLKNTHRTL-F 356
            .....|..::.|        |:|.|:..|.|.| ......::....|:||:||||||.....: |
 Frog   560 VALAEGLDIKLNTAVRQVRYTASGCEVIAVNTR-STSQTFIYKCDAVLCTLPLGVLKQQPPAVQF 623

  Fly   357 DPVLPQYKQESIENLMFGTVDKIFLEYERPFLSADISEIMLLWDDDKRDMNSSEEELAS--EAYL 419
            .|.||::|..:::.:.||.::|:.|.::|.|           ||.............||  |.:|
 Frog   624 VPPLPEWKTSAVQRMGFGNLNKVVLCFDRVF-----------WDSSVNLFGHVGSTTASRGELFL 677

  Fly   420 SKNWFKKIYSFAKVTDTLLLGWVSGREAEYMEKLDHEAVAEKCTEILRNFLQDPYVPKPKRCVCT 484
            ..|.:|.         .:||..|:|..|..||.:..:.:..:|..||:.......||:||..|.:
 Frog   678 FWNLYKA---------PILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVS 733

  Fly   485 SWKSQDFTGGAYTSIPVGATQEDIENLAQPLY------ATPQAMKPAIVFAGEHTHSSFYSTVHG 543
            .|::..:..|:|:.:..|::..|.:.:|||:.      ..||.: |.:.||||||..::.:||||
 Frog   734 RWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPAIPGAPQPI-PRLFFAGEHTIRNYPATVHG 797

  Fly   544 AYLS-----GRTAAQHL 555
            |.||     ||.|.|.|
 Frog   798 ALLSGLREAGRIADQFL 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8032NP_001262380.1 NAD_binding_8 44..104 CDD:290186 26/59 (44%)
Amino_oxidase 49..556 CDD:279874 147/594 (25%)
kdm1aXP_002936640.1 PLN02328 167..809 CDD:215187 148/595 (25%)
MRPL52 <381..454 CDD:376123 15/84 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2622
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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