DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment p and tecpr2

DIOPT Version :9

Sequence 1:NP_001303455.1 Gene:p / 41025 FlyBaseID:FBgn0086679 Length:826 Species:Drosophila melanogaster
Sequence 2:XP_005158848.1 Gene:tecpr2 / 569212 ZFINID:ZDB-GENE-060503-358 Length:1358 Species:Danio rerio


Alignment Length:557 Identity:128/557 - (22%)
Similarity:212/557 - (38%) Gaps:128/557 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TCFDISDSYIIFGASSGSLYLFNRN----GKFLLLIPNKHGAITSLS-ISANSKYVAFATQRSLI 89
            |..|.:..||..|:|.|.|||:.|.    .|:.|  ..|..|||::. :|.....||..|....:
Zfish    39 TALDSNSDYIAIGSSIGMLYLYCRRVSQMNKYNL--EGKCEAITAVKLLSCFDDLVAVGTASGRV 101

  Fly    90 CVYAVNLSAQATP-----------QVIFTHLDQSVQVTCIHWTQDEKQFYYGDSRGQV--SLVLL 141
            ..:.:     .:|           .|:..|   ...:|.:.|:.:..:.:.||.:|:|  |.|.|
Zfish   102 AFFQL-----VSPLPGRNKQLRRFDVVGLH---KSTITALAWSANGMKLFSGDDKGKVVYSAVDL 158

  Fly   142 SSFIGHSLLFNMTVHPLLYLDSP--IVQIDDFEYLLLVSNCTKCILCNTEYEDYKQIGNRPR--D 202
            ...:         .:|::..:.|  |||::..:.:||||:..:.:|..|:.:.::|:|::||  :
Zfish   159 DQGV---------CNPVVLFEEPSAIVQLEYSQKVLLVSSYQRSMLFYTQEQSHQQLGSKPRKSN 214

  Fly   203 GAFGACFFVSPQESLQPSR-------IYCARPGSRVWEVDFEGEVIQTHQFKTAL-ATAPARIQR 259
            |.|||||        ||:.       :|.||||.|:|..|..|.|.:||..|... ...|.....
Zfish   215 GKFGACF--------QPALCKQSDLVVYAARPGLRLWRTDVRGRVGETHVLKPLFNQDVPHFELF 271

  Fly   260 PGSGTDELDANAELLDYQPQNLQFAKVQ-RLNDDFLLAFTELGLYIFDIRRSAVVLWSNQFERIA 323
            |.||...        .|:|...|...:. .|.:.::|::.|..:|:.|.....::........|.
Zfish   272 PRSGPTG--------GYRPSERQLGMISCFLKEGWVLSWNEYSVYVVDCTNQVIIGGLESSGDIV 328

  Fly   324 DCRSSGSEIFVFTQSGALYSVQ------LQTLQSHAVSLIQQSKLLPCANLL--------RQHVR 374
            ....:.:|||:......:..:.      :..|..|:...  .|.|.|...||        .|.:|
Zfish   329 SVSCTENEIFILKGDRDILRISNCPEGLVSNLSDHSYRF--TSPLSPPTILLPPNGAVETAQPIR 391

  Fly   375 YFADKAREDYELKQLNPLKQLL-------IERQEYELLNDISVIFDAITQCTGSALDTHSSGGSS 432
            .......:|   .|.:|..:.:       .|.||.:.|.:.|...:|:.    .|.|......|.
Zfish   392 TMPIITEQD---TQASPSSEEVHDGVEESEEVQEEQHLEEFSHAVEALE----VAEDLEQQRASL 449

  Fly   433 ATTE-RSLSGGSSSRAPPKGVYVLENAFCDNLKQPLKTGHFKDALLTVTGKFGKNIIKYKFNIFA 496
            .|.| ||.|...:|....:|::                        |.|......:...:::...
Zfish   450 GTVESRSRSSSITSWDSAQGMF------------------------TTTEASASELSSSRYSTIT 490

  Fly   497 EE--QQQLVRELIPASERSLPFKDIKARYESGSEDQE 531
            :|  ||:||.:.|     .|..|..:.|.|||:...|
Zfish   491 QEDFQQELVVKAI-----KLKKKGKRRRQESGNRMNE 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pNP_001303455.1 WD40 <17..>132 CDD:225201 27/117 (23%)
WD40 <21..128 CDD:295369 26/113 (23%)
WD40 repeat 25..63 CDD:293791 13/36 (36%)
WD40 repeat 68..107 CDD:293791 8/50 (16%)
WD40 repeat 116..154 CDD:293791 9/39 (23%)
WD40 repeat 161..196 CDD:293791 10/36 (28%)
WD40 repeat 204..245 CDD:293791 18/47 (38%)
tecpr2XP_005158848.1 WD40 35..369 CDD:225201 87/366 (24%)
Hyd_WA 895..922 CDD:283993
Hyd_WA 944..974 CDD:283993
Hyd_WA 1176..>1197 CDD:283993
Hyd_WA 1229..1257 CDD:283993
Hyd_WA 1273..1300 CDD:283993
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3621
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4159
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.