DRSC/TRiP Functional Genomics Resources

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Protein Alignment p and Hps5

DIOPT Version :9

Sequence 1:NP_001303455.1 Gene:p / 41025 FlyBaseID:FBgn0086679 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001129084.1 Gene:Hps5 / 308598 RGDID:1311916 Length:1126 Species:Rattus norvegicus


Alignment Length:661 Identity:176/661 - (26%)
Similarity:283/661 - (42%) Gaps:137/661 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 NRIKYTCFDISDSYIIFGASSGSLYLFNRNG-KFLLLIPNKHGAITSLS-ISANSKYVAFATQRS 87
            :|:|.:...:|..::..|::.|.|.|..::| |..|.:.::.|||:.:: .|.:..|||.||.:.
  Rat    33 SRLKCSSIAVSRKWLALGSTGGGLNLIQKDGWKQRLFLSHREGAISQIACCSHDDDYVAVATSQG 97

  Fly    88 LICVYAVNLSAQATPQVIFTHLD-QSVQVTCIHWTQDEKQFYYGDSRGQVSLVLLSSF-----IG 146
            |:.|:.:|...:..|:.|....: :..:||.:.|.....:.:.||..|:||.:.|::.     ..
  Rat    98 LVVVWELNQERRGKPERIHVSSEHKGRKVTALCWDTAVLRVFVGDHVGKVSAIKLNTLKQAKAAA 162

  Fly   147 HSLLFNMTVHPLLYLDSPIVQIDDFEYLLLVSNCTKCILCNTEYEDYKQIGNRPRDGAFGACFFV 211
            ..::|  .|..::.:||.:||:|..:..||||:.|:..||:||.|.:.:|||:.|:|.||||||.
  Rat   163 AFVMF--PVQTIITVDSCVVQLDYLDGRLLVSSLTRTFLCDTEREKFWKIGNKEREGEFGACFFP 225

  Fly   212 SPQESLQPSRIYCARPGSRVWEVDFEGEVIQTHQFKTALATAPARIQRPGSGTDELDANAE-LLD 275
            ......|...|||||||||:|||.|:|||:.|||||..|:..|..:         :.|::| ..|
  Rat   226 GRCAGSQQPLIYCARPGSRIWEVSFDGEVLSTHQFKKLLSMPPLPV---------ITASSEPQYD 281

  Fly   276 Y---QPQNLQFAKVQRLNDDFLLAFTELGLYIFDIRRSAVVLWSNQFERIADCRSSGSEIFVFTQ 337
            :   ..|:|.|.|:...::..:|.:||.|:|||..:...|:||| :.:.|.|.....:|:|....
  Rat   282 HAVGSSQSLSFPKLLHFSEHCVLTWTEKGIYIFIPQNVQVLLWS-EVKDIQDVAVYKNELFCLHF 345

  Fly   338 SG-----ALYSVQ----------LQTLQSHAVSLIQQS-------KLLPCANLLRQHVRYFADKA 380
            :|     :|.||:          |..|.:....|.|.|       |.|....|  :|::...|..
  Rat   346 NGKISHLSLLSVERCVERLLRRGLWDLAARTCCLFQNSIITSRGRKTLSTDKL--EHLKSQLDLT 408

  Fly   381 REDYELKQL-------NPL-------KQLLIERQEYELLNDISVIFDAITQCTGSALDTHSSGGS 431
            .....:.||       .||       :..:...:.:.:|:  |.|:..|:...||..|..|....
  Rat   409 ACSELISQLEEVIFKFEPLDSACSSRRSSISSHESFSILD--SGIYRIISSRRGSQSDEDSCSLH 471

  Fly   432 SAT---TER-------------------SLSGGSSSRAPPKGVYVLENAFCD-NLKQPLKTGHFK 473
            |.|   .||                   :.:|.|.|.:|.........||.. |:..|.::   .
  Rat   472 SQTFSEDERLKEFASHQEEEQPEQGCCANRNGDSVSHSPMMSEIDKGEAFLPFNIPLPFRS---P 533

  Fly   474 DALLTVTGKFGKNIIKYKFNIFAEEQQQLVRELIPASERSLPFKDIKARYESGSEDQ--EEEIVR 536
            ..||::      ..:|...:.|..:..:.:..|..:.|       :|...|....||  |||:  
  Rat   534 SPLLSL------QAVKDSVSSFVRKTTEKIGTLHASPE-------LKETSEPRDADQVHEEEV-- 583

  Fly   537 RCKKPAPQVP----------HISPEEKTLYNLYLIAKSAKFSRTQCVD--------RYRAVFDEY 583
                .|...|          |..|||..|..|......|.   |:.:|        ..|||..|:
  Rat   584 ----SAVTCPLEEDTEEKEIHQPPEEDRLQGLRAATAEAV---TKLLDPLVLFEPKLLRAVLHEW 641

  Fly   584 AAGELVNLLEK 594
                 ::.|||
  Rat   642 -----LSQLEK 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pNP_001303455.1 WD40 <17..>132 CDD:225201 28/109 (26%)
WD40 <21..128 CDD:295369 27/105 (26%)
WD40 repeat 25..63 CDD:293791 10/38 (26%)
WD40 repeat 68..107 CDD:293791 12/39 (31%)
WD40 repeat 116..154 CDD:293791 9/42 (21%)
WD40 repeat 161..196 CDD:293791 15/34 (44%)
WD40 repeat 204..245 CDD:293791 24/40 (60%)
Hps5NP_001129084.1 WD40 repeat 37..75 CDD:293791 8/37 (22%)
WD40 repeat 81..117 CDD:293791 11/35 (31%)
WD40 repeat 126..165 CDD:293791 9/38 (24%)
WD40 repeat 173..210 CDD:293791 15/36 (42%)
WD40 repeat 218..257 CDD:293791 23/38 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004653
OrthoInspector 1 1.000 - - oto97672
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23287
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5011
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.010

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