DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment p and W09G3.6

DIOPT Version :9

Sequence 1:NP_001303455.1 Gene:p / 41025 FlyBaseID:FBgn0086679 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_493417.1 Gene:W09G3.6 / 173249 WormBaseID:WBGene00012369 Length:1125 Species:Caenorhabditis elegans


Alignment Length:674 Identity:144/674 - (21%)
Similarity:251/674 - (37%) Gaps:151/674 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LSLPLKHHNRIKYTCFDISDSYIIFGASSGSLYLFNRNGKF------------LLLIPNKHGAIT 69
            |:.|.....|:||||...:...:..|.|:||:|:|:|....            :.:...:.|.|:
 Worm    36 LAFPANSTKRVKYTCVASTSKSLCLGTSTGSVYIFSRYAAKSRSRTNSGAPVPVQVFTTRDGQIS 100

  Fly    70 SLSISANSKYVAFATQRSLICVYAVNLSAQATPQVIFTHLD--QSVQVTCIHWTQDEKQFYYGDS 132
            ::|:|.:.:.:|.......:.|..:| :.|....:..|..|  ...:||.:.|:.|.|..|.|.|
 Worm   101 TISVSPSEELMAIGGDSGRVSVAQLN-NGQPPTLIYSTPGDARSPDRVTALSWSADLKTVYSGHS 164

  Fly   133 RGQVSLVLLSSFIGHSLLFNMTVHPLLYLDSPIVQIDDFEYLLLVSNCTKCILCNTEYEDYKQIG 197
            .|.:....|:|    ..:|......|:..|..|:|||..:..:|::......|.:.|....:|:|
 Worm   165 SGTLHCHRLTS----RSVFRAAHQKLMKFDGEIIQIDTLQSHVLIATSLAAHLFHVESGTIQQVG 225

  Fly   198 NRPRD--GAFGACFFVSPQESLQPSRIYCARPGSRVWEVDFEGEVIQTHQFKTA--LATAPARIQ 258
            .:.|.  ...|||:...     :.:.|..|||..|:||.:..|.|.:|||::.:  :..||....
 Worm   226 KKTRSSPAPLGACYVHG-----ESAFIVAARPNGRLWEANLVGVVYRTHQYRQSGQIPRAPPISF 285

  Fly   259 RPGSGTDELDANAELLDYQP--QNLQFAKVQRLNDD------FLLAFTELGLYIFDIRRSAVVLW 315
            |....||    :|:.....|  |::...|:..::.|      .:::.....:.:.::..|.|...
 Worm   286 RSAFPTD----SAQFCGLHPDNQDVSLQKIHVIHVDNGGGRSLVVSTAGSRICVVEMETSRVTCC 346

  Fly   316 SNQFERIADCRSSGSEIF-------------VFTQSGALYSVQLQTLQSHAVSLIQQSKLLPCAN 367
            :.....|.|..:.|::||             ||.:...|..:.|:.:...:..|:     |.|: 
 Worm   347 AELDYDILDVSTCGNDIFVLLNDSKGLRKFSVFERQKTLEKLNLKGIFMQSAQLV-----LFCS- 405

  Fly   368 LLRQHVRYFAD------------KAREDYELKQLNPLKQLLIERQEYELLNDISVIFDAITQCTG 420
               .|:.|...            ..:::.|..|| .|:::|.||:              |.|   
 Worm   406 ---PHITYPMPLLTTIIEGLGTLSRKKETEKLQL-ALQKMLDERK--------------INQ--- 449

  Fly   421 SALDTHSSGGSSATTERSLSGGSSSRAPPKGVY-VLENAF-CDNLKQPLKTGHFKDALLTVTGKF 483
            |..|.:........:.:.|.....|:..|.||: ||:.|. |        :|:..|         
 Worm   450 STYDNNIEEMERKESLKKLKKTPESKKLPSGVHRVLQTAAQC--------SGYDDD--------- 497

  Fly   484 GKNIIKYKFNIFAEEQQQLVREL-----------IPASERSLPFKDIKARYE----SGSEDQ-EE 532
                    ||.   ...|.:||.           ||..:|:.....::.|.|    :|:.|. ||
 Worm   498 --------FNF---STPQALRERSRSSPCGPESPIPLEKRASEPASLELRQEYWRKNGTPDVCEE 551

  Fly   533 EIVRRCKKPAPQVPHISPEEK--------TLYNLYLIAK-SAKFSRTQCVDRYRAVFDEYAAGEL 588
            :|:.|    |.|:......||        ||..|..|.| ..:|:.|..:........|.|....
 Worm   552 DILHR----ARQILEDENSEKLVEKESLRTLLQLEGIKKDEIRFTPTVTIANAAKALAELALAVP 612

  Fly   589 VNLLEKLAQVMVEHGDTPDQAQRN 612
            |:|.........::...|...::|
 Worm   613 VDLTAIWNSGNSQNSQNPQNPEKN 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pNP_001303455.1 WD40 <17..>132 CDD:225201 31/128 (24%)
WD40 <21..128 CDD:295369 27/120 (23%)
WD40 repeat 25..63 CDD:293791 12/49 (24%)
WD40 repeat 68..107 CDD:293791 7/38 (18%)
WD40 repeat 116..154 CDD:293791 11/37 (30%)
WD40 repeat 161..196 CDD:293791 8/34 (24%)
WD40 repeat 204..245 CDD:293791 13/40 (33%)
W09G3.6NP_493417.1 WD40 <88..178 CDD:295369 21/94 (22%)
WD40 repeat 99..134 CDD:293791 7/35 (20%)
WD40 repeat 147..187 CDD:293791 12/43 (28%)
WD40 repeat 195..228 CDD:293791 8/32 (25%)
WD40 repeat 236..276 CDD:293791 15/44 (34%)
WD40 repeat 283..339 CDD:293791 8/59 (14%)
WD40 repeat 353..394 CDD:293791 9/40 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7859
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004653
OrthoInspector 1 1.000 - - oto19379
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23287
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4159
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.990

Return to query results.
Submit another query.