DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and adrb3b

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_073770286.1 Gene:adrb3b / 792519 ZFINID:ZDB-GENE-081022-154 Length:415 Species:Danio rerio


Alignment Length:454 Identity:117/454 - (25%)
Similarity:179/454 - (39%) Gaps:96/454 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VPFDANNYWAL-LALVLVLGTAAGNILVCLAIAWERRLQNVTNYFLMSLAITDLMVAVLVMPLGI 131
            :|.|......| ||||:.| |..||:||.||||....|...||.|::|:|..||::..:|.|||:
Zfish     9 IPEDVKPLLVLPLALVIFL-TVIGNLLVILAIARTPLLHTTTNVFIISMAFADLIMGCVVQPLGL 72

  Fly   132 LTLVKGYFPLGSEHCLTWICLDVLFCTASIMHLCTISVDRYLSLRYPMRFGRNKTRRRVTLKIVF 196
            ..:|.|.:.||:..|..|..|||...||||..||.|:|:||:::..|:.......:||....:..
Zfish    73 SMVVAGKWVLGNPMCDLWTSLDVFCVTASIETLCAIAVERYIAITRPLEHQVLLGKRRAAYIVCT 137

  Fly   197 VWLLSIAMSLPLSLMYSKNHASVLVNGTCQ--------IPDPVYKLVGSIVCFYIPLGVMLLTYC 253
            ||::|..:|. :.:|...:.|:.|....|.        ..:..|.:..|:|.||:||.||:..|.
Zfish   138 VWIVSSLVSF-VPIMNHNSRANYLAANDCYNNSECCDFHTNQHYAIFSSVVSFYVPLLVMVFLYG 201

  Fly   254 LTVRLLARQRQNLGGGQ--------QTAAATPGWASGWLGQAPALERRCTWRRLLKPGPGNASSV 310
            ....:..:|.:.:|..:        :.:...|.      |.|.:..||.|            ..|
Zfish   202 KVFAIANKQLKLIGKDRLRFLSSCNEDSCEIPE------GSARSYSRRTT------------KHV 248

  Fly   311 LHAHSANSTDTDLSTLD-----NHELWLP---DSSIKE-----PTPTTMTALHQFGAEMLKLSRG 362
            :..|.|      |.||.     ....|||   .:.||.     ||......|:..|    ..:.|
Zfish   249 VKEHKA------LKTLGIIMGIFSLCWLPFFIFNIIKSFNPEVPTQLVFLLLNWLG----YANSG 303

  Fly   363 LESV----------ASSSTTGSPTKSEF---SLSNHLQLQYPSSPQRYAATHQQSHHHNHQQHPA 414
            |..:          |..:..|......|   :::.||| .:.|..|..::.......|.      
Zfish   304 LNPIIYCHSPEYRNAFFNLLGCKKPKHFNQTTVNKHLQ-SFTSCIQSNSSVRMDCMGHK------ 361

  Fly   415 GVYHQQASPKGRHGTTVLGLSTTTLGIERESTRNSLASSRMGGEQSDGTLSQLSQRLRAYKKRR 478
                   .|..|.|.|...:|:...|.|.|...::         .|..|:..|::.|:..|:.|
Zfish   362 -------DPIARGGNTCSDMSSVLKGEEVEIQPHN---------DSTMTMINLAEMLKLRKRLR 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 68/201 (34%)
TM helix 1 75..101 CDD:320433 15/26 (58%)
TM helix 2 108..134 CDD:320433 11/25 (44%)
TM helix 3 146..176 CDD:320433 15/29 (52%)
TM helix 4 188..211 CDD:320433 6/22 (27%)
TM helix 5 229..258 CDD:320433 10/28 (36%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
adrb3bXP_073770286.1 None
Blue background indicates that the domain is not in the aligned region.

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