DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 5-HT2B and htr7c

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_002662019.5 Gene:htr7c / 572143 ZFINID:ZDB-GENE-060526-5 Length:400 Species:Danio rerio


Alignment Length:387 Identity:105/387 - (27%)
Similarity:158/387 - (40%) Gaps:115/387 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 WSSSEHLVLWEEDETQRTTANATSR--HNQLHVARWN-ATGNATISAT-FEDVPFDANNYWALLA 80
            ::||.....:...|......|.:|.  :| :.:|.|| :.|...:..| .|.:..      .|:.
Zfish     3 FNSSLDFFSFTHPEVASEVLNGSSHFFYN-ISMAMWNKSCGEQLLDFTAAEKIVI------GLML 60

  Fly    81 LVLVLGTAAGNILVCLAIAWERRLQNVTNYFLMSLAITDLMVAVLVMPLGILT-LVKGYFPLGSE 144
            .::...|..||:||.:|:...::|:..:||.|:|||:.||.||::|||..|:| |..|.:..|..
Zfish    61 AIITTVTVIGNMLVVIAVCVVKKLRQPSNYLLVSLAVADLSVAIVVMPFVIVTDLTGGKWLFGEV 125

  Fly   145 HCLTWICLDVLFCTASIMHLCTISVDRYLSLRYPMRFGRNKTRRRVTLKIVFVWLLSIAMSLPLS 209
            .|..:|.:||:.||||||.||.|||||||.:..|:.:...:..:.:...|..|||:|.:::||..
Zfish   126 FCNIFIGMDVMCCTASIMTLCVISVDRYLGITRPLTYPARQNGQLMAKMIFGVWLVSASITLPPF 190

  Fly   210 LMYSKNHASVLVNGTCQI-PDPVYKLVGSIVCFYIPLGVMLLTY--------------------- 252
            ..::||   |...|.|.| .|..|.:..:.|.||||:.|||..|                     
Zfish   191 CGWAKN---VNTAGVCLISQDFGYTIYSTAVAFYIPMIVMLFMYYKIFKAARKSGAKHRFTDFSR 252

  Fly   253 ----------------------------CLTV-RLLARQRQNLG--GGQQTAAATPGWASG---- 282
                                        |..: |||:|:|||:.  ..:|.||.|.|...|    
Zfish   253 RERLETVASEALRMQGLKPQHTPGVAEECAALSRLLSRERQNISIFKREQKAATTLGVIVGVFGI 317

  Fly   283 --------------------------------WLGQAPAL-----------ERRCTWRRLLK 301
                                            |.|.|.:|           :.|.|:|.||:
Zfish   318 CWLPFFILSTARPFICGVKCSCIPIWLERTLLWFGYANSLMNPFIYAFFNRDLRSTYRDLLR 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 78/244 (32%)
TM helix 1 75..101 CDD:320433 7/25 (28%)
TM helix 2 108..134 CDD:320433 15/26 (58%)
TM helix 3 146..176 CDD:320433 19/29 (66%)
TM helix 4 188..211 CDD:320433 7/22 (32%)
TM helix 5 229..258 CDD:320433 12/78 (15%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
htr7cXP_002662019.5 7tmA_5-HT7 54..374 CDD:320452 89/328 (27%)
TM helix 1 55..81 CDD:320452 7/31 (23%)
TM helix 2 88..114 CDD:320452 14/25 (56%)
TM helix 3 127..157 CDD:320452 19/29 (66%)
TM helix 4 169..191 CDD:320452 7/21 (33%)
TM helix 5 208..237 CDD:320452 11/28 (39%)
TM helix 6 299..329 CDD:320452 6/29 (21%)
TM helix 7 342..367 CDD:320452 4/24 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.