DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and si:dkey-247m21.3

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_017208337.2 Gene:si:dkey-247m21.3 / 559089 ZFINID:ZDB-GENE-091204-249 Length:390 Species:Danio rerio


Alignment Length:331 Identity:92/331 - (27%)
Similarity:140/331 - (42%) Gaps:89/331 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DETQRTTANATSRHNQLHVARWNATGNATISATFEDVPFDANNYWALLALVLVLGTAAGNILVCL 96
            |..:.:.....|:|          |...|:|               ::.:.:::.||.||:||.:
Zfish     6 DSAEDSVDEVVSKH----------TSRITLS---------------IVLVTIIIMTALGNLLVMV 45

  Fly    97 AIAWERRL-QNVTNYFLMSLAITDLMVAVLVMPLGILTLVKGYFPLGSEHCLTWICLDVLFCTAS 160
            |:..:|:| :..||:|::|||..||:||::||||..:.|..|.:..|...||....||||..|||
Zfish    46 ALCKDRQLRKKKTNFFIVSLAFADLLVALVVMPLAAIELTTGKWNYGETFCLVRTSLDVLLTTAS 110

  Fly   161 IMHLCTISVDRYLSL-RYPMRFGRNKTRRRVTLKIVFVWLLSIAMSLPLSLMYSKNHASV----- 219
            |:|||.|::|||.:: ..|:.:....|..||:|.:|..|::...:|. |.:|.|.|...:     
Zfish   111 ILHLCCIALDRYYAICCQPLVYNNKMTPVRVSLMLVGCWVIPFFISF-LPIMQSWNTIGIESFIE 174

  Fly   220 ------LVNGTC--QIPDPVYKLVGSIVCFYIPLGVMLLTYCLTVRLLARQRQNLGGGQQTAAAT 276
                  ..|.||  .:..| |.||.|.|.||:||.:|:|.|                        
Zfish   175 QRKLNSSRNSTCVFMVNQP-YALVCSAVAFYVPLVLMVLAY------------------------ 214

  Fly   277 PGWASGWLGQAPALERRCTWRRLLKPGPGNASSVLHAHSANSTDTDLSTLDNHELWLPDSSIKEP 341
                                :|:.....|:|..:...|.|.|..|  ||..|::.. ..|.||..
Zfish   215 --------------------QRIYVTAMGHARRIGSLHRAGSAPT--STYPNNDQH-GSSRIKNE 256

  Fly   342 TPTTMT 347
            |....|
Zfish   257 TKAAKT 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 71/207 (34%)
TM helix 1 75..101 CDD:320433 7/25 (28%)
TM helix 2 108..134 CDD:320433 14/25 (56%)
TM helix 3 146..176 CDD:320433 17/30 (57%)
TM helix 4 188..211 CDD:320433 7/22 (32%)
TM helix 5 229..258 CDD:320433 13/28 (46%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
si:dkey-247m21.3XP_017208337.2 7tmA_5-HT4 23..325 CDD:320184 88/304 (29%)
TM helix 1 24..50 CDD:320184 9/40 (23%)
TM helix 2 58..84 CDD:320184 14/25 (56%)
TM helix 3 96..126 CDD:320184 17/29 (59%)
TM helix 4 139..162 CDD:320184 7/23 (30%)
TM helix 5 191..220 CDD:320184 14/73 (19%)
TM helix 6 254..284 CDD:320184 3/9 (33%)
TM helix 7 293..318 CDD:320184
Blue background indicates that the domain is not in the aligned region.

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