DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and Dop1R1

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001262563.1 Gene:Dop1R1 / 41726 FlyBaseID:FBgn0011582 Length:560 Species:Drosophila melanogaster


Alignment Length:351 Identity:112/351 - (31%)
Similarity:169/351 - (48%) Gaps:69/351 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SLGAYNDSGGDDWSSSEHLVLWEEDETQRTTANA--------------------TSRHNQLHVAR 52
            ::|..:.||...:|::..|:..:....|.|||..                    ||.:|:   :.
  Fly    44 TIGGNHTSGSTGFSTNSTLLDADHLPLQLTTAKVDLDIEIDIQLLTNGYDGTTLTSFYNE---SS 105

  Fly    53 W-NATGNATISATFEDVPFDANNYWALLAL--------VLVLGTAAGNILVCLAIAWERRLQNVT 108
            | ||:...||... |..|.      :|:::        ||:..:.||||||||||..||.|:.:.
  Fly   106 WTNASEMDTIVGE-EPEPL------SLVSIVVVGIFLSVLIFLSVAGNILVCLAIYTERSLRRIG 163

  Fly   109 NYFLMSLAITDLMVAVLVMPLGILTLVKGYFPLGSEHCLTWICLDVLFCTASIMHLCTISVDRYL 173
            |.||.||||.||.||.|||....:..:.||:..|::.|.||:..||:..||||::||.||:|||:
  Fly   164 NLFLASLAIADLFVASLVMTFAGVNDLLGYWIFGAQFCDTWVAFDVMCSTASILNLCAISMDRYI 228

  Fly   174 SLRYPMRFGRNKTRRRVTLKIVFVWLLSIAMS-LPLSLMYSKNHASVLV--NG----TCQIP-DP 230
            .::.|:|:||..|||...:.|..:|||:..:| :|:||...:....::.  ||    ||.:. .|
  Fly   229 HIKDPLRYGRWVTRRVAVITIAAIWLLAAFVSFVPISLGIHRPDQPLIFEDNGKKYPTCALDLTP 293

  Fly   231 VYKLVGSIVCFYIPLGVMLLTYCLTVRLLARQRQNLGGGQQTAAATPGWASGWLGQAPALERRCT 295
            .|.:|.|.:.||.|..||:..||   ||....::::...:  |...|       |:....:|..:
  Fly   294 TYAVVSSCISFYFPCVVMIGIYC---RLYCYAQKHVKSIK--AVTRP-------GEVAEKQRYKS 346

  Fly   296 WRRLLKPGPGNASSV-----LHAHSA 316
            .||     |.|....     ||.||:
  Fly   347 IRR-----PKNQPKKFKVRNLHTHSS 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 81/208 (39%)
TM helix 1 75..101 CDD:320433 13/33 (39%)
TM helix 2 108..134 CDD:320433 14/25 (56%)
TM helix 3 146..176 CDD:320433 16/29 (55%)
TM helix 4 188..211 CDD:320433 8/23 (35%)
TM helix 5 229..258 CDD:320433 11/28 (39%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
Dop1R1NP_001262563.1 7tmA_Ap5-HTB1-like 130..442 CDD:320193 92/255 (36%)
TM helix 1 130..156 CDD:320193 12/25 (48%)
TM helix 2 163..189 CDD:320193 14/25 (56%)
TM helix 3 201..231 CDD:320193 16/29 (55%)
TM helix 4 243..265 CDD:320193 7/21 (33%)
TM helix 5 292..321 CDD:320193 13/31 (42%)
TM helix 6 371..401 CDD:320193
TM helix 7 410..435 CDD:320193
Blue background indicates that the domain is not in the aligned region.

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