DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and Octbeta3R

DIOPT Version :9

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_001034048.2 Gene:Octbeta3R / 3885573 FlyBaseID:FBgn0250910 Length:1256 Species:Drosophila melanogaster


Alignment Length:1242 Identity:258/1242 - (20%)
Similarity:401/1242 - (32%) Gaps:513/1242 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 ATGNATISATFEDVPFD----ANNYWALLALVL---------VLGTAAGNILVCLAIAWERRLQN 106
            :|....|:|...|:..|    ....|..|:|:|         :|....||.||.:::...|:|:.
  Fly   108 STVGPNITANGSDIAVDNQAELEESWLDLSLLLLKGFIFSSIILAAVLGNALVIISVQRNRKLRV 172

  Fly   107 VTNYFLMSLAITDLMVAVLVMPLGI-LTLVKGYFPLGSEHCLTWICLDVLFCTASIMHLCTISVD 170
            :||||::|||:.|::||:..|.... :.|..|.:..|...|..:..|||.|.||||:|||.||||
  Fly   173 ITNYFVVSLAMADMLVALCAMTFNASVELSGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVD 237

  Fly   171 RYLSLRYPMRFGRNKTRRRVTLKIVFVWLLSIAMSL-PLSLMY--SKNH----------ASVLVN 222
            ||.::..|:.:..|.|.:.|...:..||:|...:|. |:.|.:  ::.|          .|.:||
  Fly   238 RYYAIVRPLEYPLNMTHKTVCFMLANVWILPALISFTPIFLGWYTTEEHLREISLHPDQCSFVVN 302

  Fly   223 GTCQIPDPVYKLVGSIVCFYIPLGVMLLTYCLTVRLLARQRQNLGGGQQTAAATPGWASGWLGQA 287
                   ..|.|:.|.|.|:||..|||:.|....:...|||:                       
  Fly   303 -------KAYALISSSVSFWIPGIVMLVMYWRIFKEAIRQRK----------------------- 337

  Fly   288 PALERRCTWRRLLKPGPGNASSVLHAHSANSTDTDLSTLDNHELWLPDSSIKEPTPTTMTALHQF 352
             ||.|  |...:|      .:||...|:  ...|.||.|...:..|..:|.:|.|.:.::     
  Fly   338 -ALSR--TSSNIL------LNSVHMGHT--QQPTSLSYLHPSDCDLNATSAREETHSALS----- 386

  Fly   353 GAEMLKLSRGLESVASSSTTGSPTKSEFSLSNHLQLQYPSSP----------------QRY-AAT 400
                     .||.:...:|.....:.|..     :|:.||.|                :|| ..|
  Fly   387 ---------NLEDMLQPATDEDDDRDECD-----ELRVPSPPPRRLSRSSIDLRDLEQERYEKVT 437

  Fly   401 H-----------QQSHHHNHQQHPAGVYHQQASPKGR--------------HGTTVLGLSTTTLG 440
            |           ||...||..|.||.|::.|...:|:              :|.. ..||.|:..
  Fly   438 HTDSAPSMMALQQQQPSHNQLQPPAPVFNPQIWTEGKMIPSKELDKEHSHPNGPQ-QQLSLTSGS 501

  Fly   441 IERESTRNSLASSRMGG---EQSDGT---------------LSQLSQRLRAYKKRRRASSAV--P 485
            ...|....|.|....||   ::|:|.               |.:|.:....|.||:...:.:  |
  Fly   502 GNSEPEPESTAYRVFGGLNSDESEGNDLYDTHLPLAEDNKELKRLIEDNYLYFKRQTGGTIISGP 566

  Fly   486 GREKRAGHEDAD------------------EDVE------------------------------- 501
            |..|.|...:.|                  .|.|                               
  Fly   567 GGGKYAALSETDFIRLKAGAAACGRKAFASSDSEFLRTISESRALPEQPVPGKEKGFNILSLLSK 631

  Fly   502 -----TPTSTLRRHKRHNSLPKNALY---PRHTTVQESLDDDDDEEEESAQQKDQQTKSKICHSD 558
                 |...||.: |||.:..:.:.:   .|:..:..|.:.....:|...:::.:|      |||
  Fly   632 TKRSSTECFTLEK-KRHQANSEGSSFFRRSRNRKLSHSYNGCGGGKERKLERRQRQ------HSD 689

  Fly   559 TELDP--PQKAKQCHIAGQNHQSDYLQ--------------------------LPSVCTCPYFGD 595
            |:..|  |......::..:...:..:|                          |..:..|  ||:
  Fly   690 TDSTPNKPDILLDINVLSEQSGASVIQQFSDGVQLIDFSELKTPPERIRSDDELAQLADC--FGE 752

  Fly   596 RPLQNCVKSAEVKIISSAFRVTTTTTAVSSSPSEME----LLMCSSGNKKSLTSSVSAGITGGPA 656
            .|.|                  ..|...|.||.|:.    ||:.||.....:..|:|..: |.||
  Fly   753 SPQQ------------------PATPPPSLSPPELPEPSGLLIASSSELAEIFRSLSFPL-GRPA 798

  Fly   657 GA-----------------------APATV-----GSTLSPHSAHNQGSSLTVQ-SDGSGYLAAP 692
            ||                       ||..:     |:..|..|::.|.:|:.|. .....:.|||
  Fly   799 GAPQRLSTLSDQVCANYLMSPPNTPAPPAISVPNGGAMDSSASSNAQSASINVYFLSPPPHAAAP 863

  Fly   693 G--------------------TPCP---------------------------------------- 697
            |                    .|.|                                        
  Fly   864 GYTPSDTSTVSLDVVTSLPMPVPVPQPNPQMASQSNISPKPEIILDSTLSPVEGCGDEHRDVTSP 928

  Fly   698 --------GRRKLSIS--------------------------------KTASVVTWD-------- 714
                    |...:|:|                                :.|||||:|        
  Fly   929 LFKRKDSAGDADVSVSGNGGAGGVGGVGGRQGRCSILAGYDGIQTVRKRQASVVTYDVNVINFSQ 993

  Fly   715 -----------------SSRH----------------------------RRRGSSFGGVRTSLLL 734
                             |::|                            |.||.:|..|.:.|..
  Fly   994 ENSDSRSYIPMGRVSTSSAKHEFSNKSSLIRRGGICIFVDEEEAEIIEQRPRGITFAAVPSPLPK 1058

  Fly   735 TP-------TKTATTSNSSTPLRRSATLRSHQNMNYQGAGECGGKTRTTTSS--------PCMLQ 784
            .|       :.|.||:|::......:|:                .|..||||        |.:.|
  Fly  1059 CPLCGADISSTTGTTANATATANADSTI----------------DTTVTTSSKRSIHEQTPDLGQ 1107

  Fly   785 R----QQTVRSHHSRNSSVI-----SRNSSRH-----------GRIIR------LEQKATKVLGV 823
            |    ..:.|..|.|.::|.     |:|..|.           |..:|      .|.||.:.||:
  Fly  1108 RPASSSSSTRFWHKRTAAVTACWQQSKNRKRRFKTGCSHCGATGGSVRPAKGWKAEHKAARTLGI 1172

  Fly   824 VFFTFVILWSPFFVLNLLPTVC---AECEERISHWVFDVVTWLGYASSMVNPIFYTIFNKVFRQA 885
            :...|::.|.|||:..::.::|   ..|.:.:    ..|:.|:||.:|.:||:.|..||:.||:|
  Fly  1173 IMGVFLLCWLPFFLWYVITSLCGPACPCPDVL----VVVLFWIGYFNSTLNPLIYAYFNRDFREA 1233

  Fly   886 FKKVLLC 892
            |:..|.|
  Fly  1234 FRNTLEC 1240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tm_1 90..>262 CDD:278431 63/185 (34%)
7tm_4 90..>238 CDD:304433 54/161 (34%)
Octbeta3RNP_001034048.2 7tm_4 146..>346 CDD:304433 71/232 (31%)
7tm_1 156..>344 CDD:278431 70/220 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45460675
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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