DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and Drd5

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:NP_036900.2 Gene:Drd5 / 25195 RGDID:2523 Length:475 Species:Rattus norvegicus


Alignment Length:255 Identity:82/255 - (32%)
Similarity:130/255 - (50%) Gaps:39/255 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 LALVLVLGTAAGNILVCLAIAWERRLQ-NVTNYFLMSLAITDLMVAVLVMPLGILTLVKGYFPLG 142
            |..:|::.|..||:|||.||...|.|: .:||.|::|||::||.||:||||...:..|.||:|.|
  Rat    44 LLTLLIVWTLLGNVLVCAAIVRSRHLRAKMTNIFIVSLAVSDLFVALLVMPWKAVAEVAGYWPFG 108

  Fly   143 SEHCLTWICLDVLFCTASIMHLCTISVDRYLSLRYPMRFGRNKTRRRVTLKIVFVWLLSIAMS-L 206
            : .|..|:..|::..||||::||.||||||.::..|.|:.|..|:|...:.:...|.|||.:| :
  Rat   109 T-FCDIWVAFDIMCSTASILNLCIISVDRYWAISRPFRYERKMTQRVALVMVGLAWTLSILISFI 172

  Fly   207 PLSLMYSKNHA------SVLVNGT--------------CQIP-DPVYKLVGSIVCFYIPLGVMLL 250
            |:.|.:.::.|      .:|.|||              |... :..|.:..|::.||||:.:|::
  Rat   173 PVQLNWHRDKAGSQGQEGLLSNGTPWEEGWELEGRTENCDSSLNRTYAISSSLISFYIPVAIMIV 237

  Fly   251 TYCLTVRLLARQRQNLGGGQQTAAATPGWASGWLGQAPALERRCTWRRLLKPGPGNASSV 310
            ||....|:...|.:.:..               |.:|....:.|..|...:|.|...:|:
  Rat   238 TYTRIYRIAQVQIRRISS---------------LERAAEHAQSCRSRGAYEPDPSLRASI 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 75/210 (36%)
TM helix 1 75..101 CDD:320433 10/21 (48%)
TM helix 2 108..134 CDD:320433 14/25 (56%)
TM helix 3 146..176 CDD:320433 15/29 (52%)
TM helix 4 188..211 CDD:320433 7/23 (30%)
TM helix 5 229..258 CDD:320433 9/28 (32%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
Drd5NP_036900.2 7tm_GPCRs 39..364 CDD:475119 82/255 (32%)
TM helix 1 41..65 CDD:410628 10/20 (50%)
TM helix 2 75..97 CDD:410628 13/21 (62%)
TM helix 3 112..134 CDD:410628 9/21 (43%)
TM helix 4 157..173 CDD:410628 5/15 (33%)
TM helix 5 217..240 CDD:410628 8/22 (36%)
TM helix 6 289..311 CDD:410628
TM helix 7 333..358 CDD:410628
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 415..443
Blue background indicates that the domain is not in the aligned region.

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