DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and Octbeta2R

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_003436280.1 Gene:Octbeta2R / 1273081 VectorBaseID:AGAMI1_002356 Length:526 Species:Anopheles gambiae


Alignment Length:437 Identity:113/437 - (25%)
Similarity:175/437 - (40%) Gaps:123/437 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SSSEHL-----------------VLWEEDETQRTTANATSRHNQLHVAR---------------- 52
            |||.||                 ||:......|..|.|.:..:...||.                
Mosquito    18 SSSSHLQSAAALLASTFGLADGTVLYNHSVRDRGDAGALAAASAASVAGTGGLESATAGGDTLSV 82

  Fly    53 WNATGN----------ATISATFE---------DVPFDA-NNYW---------ALLALVLVLGTA 88
            ::|:|:          |.|..|.|         |...|| ...|         |.:.:.:::...
Mosquito    83 FDASGSSIMLQGFSSTAPIGGTIETVGANESIVDGGIDAGGGEWIDVVLLVLKASIMMFIIVAAI 147

  Fly    89 AGNILVCLAIAWERRLQNVTNYFLMSLAITDLMVAVLVMPLGILTLVKGYFPLGSEHCLTWICLD 153
            .||:||.:::...|:|:.:||||::|||:.|:|||::.|.......:.|.:..||..|..|..||
Mosquito   148 FGNLLVIISVKRHRKLRVITNYFVVSLAMADIMVAMMAMTFNFSVQITGSWKFGSFMCDVWNSLD 212

  Fly   154 VLFCTASIMHLCTISVDRYLSLRYPMRFGRNKTRRRVTLKIVFVWLLSIAMS-LPLSLMY---SK 214
            |.|.||||:|||.||||||.::..|:::..:.|:|.|.:.::..|:....:| :|:...:   .|
Mosquito   213 VYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVAIMLLNTWISPALLSFVPIFAGWYTTEK 277

  Fly   215 NHASVLVN-GTCQ-IPDPVYKLVGSIVCFYIPLGVMLLTYCLTVRLLARQRQNLGGGQQTA---- 273
            :...||.| .:|. |.:..|.::.|.:.|:||..:|:.||....|...||.:.|...|.||    
Mosquito   278 HKQEVLDNPDSCLFIVNKPYAVISSSISFFIPCTIMVFTYFQIFREANRQEKQLALRQGTAMLMH 342

  Fly   274 -----AATPGWASGWLGQAPALERRCTWRRLLKPGPGNASSV-LHAHSANSTDTDLSTLDNHEL- 331
                 ....|..||......||.           |.|::.:: ||...|..|.|.    |.|.: 
Mosquito   343 QHNTGGGVGGGGSGGGTNGEALS-----------GSGSSKTLTLHEVDAEQTPTK----DRHLIK 392

  Fly   332 ---------------------WLP------DSSIKE--PTPTTMTAL 349
                                 |||      .:|:.:  |.|..:.||
Mosquito   393 MKREHKAARTLGIIMGTFILCWLPFFLWYIITSLCDRCPNPDIVVAL 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 66/207 (32%)
TM helix 1 75..101 CDD:320433 6/34 (18%)
TM helix 2 108..134 CDD:320433 12/25 (48%)
TM helix 3 146..176 CDD:320433 19/29 (66%)
TM helix 4 188..211 CDD:320433 5/23 (22%)
TM helix 5 229..258 CDD:320433 8/28 (29%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
Octbeta2RXP_003436280.1 7tmA_DmOct-betaAR-like 134..466 CDD:320194 91/321 (28%)
TM helix 1 134..160 CDD:320194 5/25 (20%)
TM helix 2 167..193 CDD:320194 12/25 (48%)
TM helix 3 205..235 CDD:320194 19/29 (66%)
TM helix 4 247..270 CDD:320194 5/22 (23%)
TM helix 5 294..323 CDD:320194 8/28 (29%)
TM helix 6 394..424 CDD:320194 3/29 (10%)
TM helix 7 434..459 CDD:320194 2/6 (33%)
Blue background indicates that the domain is not in the aligned region.

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