DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and adra1ba

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_001922013.4 Gene:adra1ba / 100149100 ZFINID:ZDB-GENE-120510-1 Length:486 Species:Danio rerio


Alignment Length:492 Identity:122/492 - (24%)
Similarity:192/492 - (39%) Gaps:160/492 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EEDETQRTTANATSRHNQLHVARWNATGNATISATFEDVPFDANNYWALLALVLVLG-----TAA 89
            :.|......:||:|..:.  |:..:::||.|..::|        :....|.|.:|||     ...
Zfish     4 DTDHAANFLSNASSELSD--VSNSSSSGNGTAPSSF--------SLSRALPLGMVLGAFIVFAIV 58

  Fly    90 GNILVCLAIAWERRLQNVTNYFLMSLAITDLMVAVLVMPLGILTLVKGYFPLGSEHCLTWICLDV 154
            |||||.|::...|.|:..||||:::||:.||:::..|:|:.....:..|:..|...|..|..:||
Zfish    59 GNILVILSVVCNRHLRIPTNYFIINLAMADLLLSTTVLPVSATREILNYWVFGRIFCDIWAAVDV 123

  Fly   155 LFCTASIMHLCTISVDRYLSLRYPMRFGRNKTRRRVTLKIVFVWLLSIAMSLPLSLMY----SKN 215
            |.||||||.||.||:|||:.:|||:::....|.:|..|.::.||:|:..:|:...|.:    |::
Zfish   124 LCCTASIMSLCVISIDRYIGVRYPLQYPSIVTEKRALLAMLGVWVLAFVISIGPLLGWKEPPSED 188

  Fly   216 HASVLVNGTCQIPDPVYKLVGSIVCFYIPLGVMLLTYCLTVRLLARQRQNLGGG----------- 269
            ....|:.     .:|.|.|..|:..|||||.|:|..||....:..|..:||..|           
Zfish   189 DTVCLIT-----EEPFYALFSSLGSFYIPLAVILAMYCRVYIVAKRTTKNLEAGVMKEHMDSNEL 248

  Fly   270 ---------------------------------QQTAAATPGWASG------------------- 282
                                             ::.||.|.|...|                   
Zfish   249 TLRIHYKGSQTQEDCTKGHLRSSLTVKLLKFSREKKAAKTLGVVVGMFILCWLPFFLALPIGSFN 313

  Fly   283 --------------WLGQ---------APALER----------RCT--------WRRLLKPGPGN 306
                          |||.         .|...|          ||.        ||......| |
Zfish   314 TSLRPPETFFKVIFWLGYFNSCLNPIIYPCYSREFKQAFIRILRCQCQQKKQQGWRAYNYRVP-N 377

  Fly   307 ASSVLHAHSANSTDTDLSTLDNHELWLPDSSIKEPTPTTMTALHQFGAEMLKLSRGL-------E 364
            |:.|....|:...:..|.||          :..:|:||..:.:  .|:   :.:.||       .
Zfish   378 ANHVYSDTSSICMNGSLQTL----------APSQPSPTLFSRV--VGS---RPASGLLPGWGPCT 427

  Fly   365 SVASSSTTGSP------TKSEFS---LSNHLQLQYPS 392
            |.:|||.:|||      :.|:.:   .||.:.|.:|:
Zfish   428 SSSSSSLSGSPFPGMMRSGSQATSPCKSNRMALLFPN 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 71/201 (35%)
TM helix 1 75..101 CDD:320433 11/30 (37%)
TM helix 2 108..134 CDD:320433 10/25 (40%)
TM helix 3 146..176 CDD:320433 18/29 (62%)
TM helix 4 188..211 CDD:320433 6/22 (27%)
TM helix 5 229..258 CDD:320433 13/28 (46%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
adra1baXP_001922013.4 None
Blue background indicates that the domain is not in the aligned region.

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