DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT2B and drd6b

DIOPT Version :10

Sequence 1:NP_001262373.1 Gene:5-HT2B / 41017 FlyBaseID:FBgn0261929 Length:947 Species:Drosophila melanogaster
Sequence 2:XP_073774234.1 Gene:drd6b / 100001636 ZFINID:ZDB-GENE-121214-145 Length:426 Species:Danio rerio


Alignment Length:191 Identity:74/191 - (38%)
Similarity:113/191 - (59%) Gaps:8/191 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 ALLALVLVLGTAAGNILVCLAIAWERRLQN-VTNYFLMSLAITDLMVAVLVMPLGILTLVKGYFP 140
            ||.|  |:|.|..||.|||.|:...|.|:: |||:|::|||::||.|||||||...::.|.|.:.
Zfish    22 ALCA--LILSTLLGNTLVCAAVIKFRHLRSKVTNFFVISLAVSDLFVAVLVMPWKAVSEVAGCWL 84

  Fly   141 LGSEHCLTWICLDVLFCTASIMHLCTISVDRYLSLRYPMRFGRNKTRRRVTLKIVFVWLLSIAMS 205
            .|. .|.|||..|::..||||::||.||:|||.::..|.|:.|..|:|...:.|...|.||:.:|
Zfish    85 FGG-FCDTWIAFDIMCSTASILNLCIISLDRYWAISSPFRYERKMTQRMAFIMIGMAWTLSVLIS 148

  Fly   206 -LPLSLMYSK--NHASVLVNGTCQIP-DPVYKLVGSIVCFYIPLGVMLLTYCLTVRLLARQ 262
             :|:.|.:.:  :|...:.:..|... :..|.:..|::.||||:.:|:.||....|:...|
Zfish   149 FIPVKLNWHRAVDHNLTVPSEDCTASLNRTYAIASSLISFYIPVIIMIGTYTRIYRIAQTQ 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2BNP_001262373.1 7tmA_5-HT2_insect-like 74..>267 CDD:320433 74/191 (39%)
TM helix 1 75..101 CDD:320433 12/23 (52%)
TM helix 2 108..134 CDD:320433 15/25 (60%)
TM helix 3 146..176 CDD:320433 16/29 (55%)
TM helix 4 188..211 CDD:320433 7/23 (30%)
TM helix 5 229..258 CDD:320433 9/28 (32%)
7tm_GPCRs <799..893 CDD:475119
TM helix 6 818..840 CDD:410628
TM helix 7 854..879 CDD:410628
drd6bXP_073774234.1 None
Blue background indicates that the domain is not in the aligned region.

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