DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and MSP1

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_011542.3 Gene:MSP1 / 852915 SGDID:S000003260 Length:362 Species:Saccharomyces cerevisiae


Alignment Length:308 Identity:74/308 - (24%)
Similarity:129/308 - (41%) Gaps:85/308 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 GIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHG 173
            |:|.:::..|            |::||              .||..|...::.::.....:||:|
Yeast    95 GLDPLISDLH------------ESVIY--------------PLMMPEVYSNSPLLQAPSGVLLYG 133

  Fly   174 PPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLF---NKIAELVS 235
            |||.|||.|.||||::         :..:.:.|...|:..||:.||.|:|..:|   ||:...: 
Yeast   134 PPGCGKTMLAKALAKE---------SGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCI- 188

  Fly   236 DPNNLVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDL 300
                   :.|||::|....||: :.:|....::.  ..:|..|.|.....|:|:..:|....||.
Yeast   189 -------IFIDEIDSFLRERSS-TDHEVTATLKA--EFMTLWDGLLNNGRVMIIGATNRINDIDD 243

  Fly   301 AFVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGR 365
            ||:.|...|..:..||..   :.|| :|:.|:....|        |.:|..|..:|:.:.|.||.
Yeast   244 AFLRRLPKRFLVSLPGSD---QRYK-ILSVLLKDTKL--------DEDEFDLQLIADNTKGFSGS 296

  Fly   366 TLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHLGEQRLL 413
            .|::|                        ..:|.|:|.::::.::|.|
Yeast   297 DLKEL------------------------CREAALDAAKEYIKQKRQL 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 44/151 (29%)
AAA 169..314 CDD:278434 44/147 (30%)
MSP1NP_011542.3 MDN1 <10..>164 CDD:227596 25/103 (24%)
RecA-like_ATAD1 92..255 CDD:410928 53/205 (26%)
AAA_lid_3 280..319 CDD:407720 11/62 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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