DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and SEC18

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_009636.3 Gene:SEC18 / 852372 SGDID:S000000284 Length:758 Species:Saccharomyces cerevisiae


Alignment Length:368 Identity:79/368 - (21%)
Similarity:158/368 - (42%) Gaps:77/368 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 DNGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGLWENLI 134
            |.|.::|.....|........|:  :.|:..|.|.:|...:.|    |::|.|.:..| :..:..
Yeast   178 DLGDIEPTSAVATGIETKGILTK--QTQINFFKGRDGLVNLKS----SNSLRPRSNAV-IRPDFK 235

  Fly   135 YET----GL-KE--KLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSI 192
            :|.    || ||  |:.:.|.::.:|....::...|:..:.:||:||||||||.:.:.:...|:.
Yeast   236 FEDLGVGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKGLLLYGPPGTGKTLIARKIGTMLNA 300

  Fly   193 RTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAE----LVSDPNNLVCVLIDEVESLAY 253
            :....        :|...:.||:...|.:.:..|| |.||    ...:.::|..::.||::|:..
Yeast   301 KEPKI--------VNGPEILSKYVGSSEENIRNLF-KDAEAEYRAKGEESSLHIIIFDELDSVFK 356

  Fly   254 AR------SAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRL 310
            .|      :.:..|       |||.:|.::|.:....|:|::..:|....||.|.:  .|.::::
Yeast   357 QRGSRGDGTGVGDN-------VVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQV 414

  Fly   311 FIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAH 375
            .|..|......:|:     ::.:..:.:..:: |:|..   |.:||..:...||..:..|     
Yeast   415 EIHLPDEKGRLQIF-----DIQTKKMRENNMM-SDDVN---LAELAALTKNFSGAEIEGL----- 465

  Fly   376 AQYTSSTLFELDQ-------------------KISLSDFLDAM 399
              ..|::.|.:::                   |::..|||:|:
Yeast   466 --VKSASSFAINKTVNIGKGATKLNTKDIAKLKVTREDFLNAL 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 51/215 (24%)
SEC18NP_009636.3 CDC48_N 29..98 CDD:215012
CDC48_2 134..204 CDD:215011 5/27 (19%)
CDC48 <232..>629 CDD:273521 65/307 (21%)
RecA-like_NSF-SEC18_r1-like 240..416 CDD:410912 46/191 (24%)
Blue background indicates that the domain is not in the aligned region.

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