DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and AT1G62130

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_176404.3 Gene:AT1G62130 / 842509 AraportID:AT1G62130 Length:1043 Species:Arabidopsis thaliana


Alignment Length:414 Identity:104/414 - (25%)
Similarity:171/414 - (41%) Gaps:96/414 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VCLRGNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVL-LERDNGGVQPL 77
            :|::...||.::....:..||..:.::      |....||        |..:| ||....|::.|
plant   670 LCMKDLTLRRDSAEKIIGWALSHHIKS------NPGADPD--------VRVILSLESLKCGIELL 720

  Fly    78 KVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQF--VGLWENLIYETGLK 140
            :: |:|.......|             |.:..|..|:..|..   ...|  :|..||:  :..||
plant   721 EI-ESKKSLKDIVT-------------ENTFEISDIIPPSEI---GVTFDDIGALENV--KDTLK 766

  Fly   141 E-KLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLV 204
            | .:|.|....| |.:.::..   .||. |||.||.|||||.|.||:|.:         |..:|:
plant   767 ELVMLPFQWPEL-FCKGQLTK---PCNG-ILLFGPSGTGKTMLAKAVATE---------AGANLI 817

  Fly   205 EINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAMRV 269
            .::    .|:||||..|.|..:|: :|..:| |:   .:.:|||||:.:          |..::.
plant   818 NMS----MSRWFSEGEKYVKAVFS-LASKIS-PS---IIFLDEVESMLH----------RYRLKT 863

  Fly   270 VNAVLTQLDSLKT--CPNVLILATSNLAQSIDLAFVDRADIRLFIGYPGISAIREIYKGMLAELM 332
            .|..:...|.|:|  ...||:||.:|....:|.|.:.|...||.:|.|              :..
plant   864 KNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVIRRLPHRLMVGLP--------------DAR 914

  Fly   333 SAGVLQREVLESEDAEEGL-LTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFL 396
            |...:.:.:|..||..... :.::|..:.|.||..|:.|.:.|    ....:.|:.:| ..|:..
plant   915 SRSKILKVILSKEDLSPDFDIDEVASMTNGYSGNDLKNLCVTA----ARRRIIEIVEK-EKSERD 974

  Fly   397 DAMLEALEQHLG----EQRLLKLE 416
            .|:.|......|    :.|:||:|
plant   975 AAVAEGRVPPAGSGGSDLRVLKME 998

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 61/201 (30%)
AT1G62130NP_176404.3 FHA 93..193 CDD:469597
RPT1 705..1016 CDD:440835 95/365 (26%)
P-loop containing Nucleoside Triphosphate Hydrolases 754..908 CDD:476819 59/188 (31%)
Blue background indicates that the domain is not in the aligned region.

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